Quillaja saponaria (soapbark tree): O6P43_004642
Help
Entry
O6P43_004642 CDS
T09778
Name
(GenBank) putative Dead box ATP-dependent RNA helicase
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
O6P43_004642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsa03041
]
O6P43_004642
03009 Ribosome biogenesis [BR:
qsa03009
]
O6P43_004642
Enzymes [BR:
qsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O6P43_004642
Spliceosome [BR:
qsa03041
]
Complex A
U1 snRNP components
U1 related factors
O6P43_004642
Complex B
O6P43_004642
Ribosome biogenesis [BR:
qsa03009
]
Eukaryotic type
Pre-60S particles
Helicases
O6P43_004642
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
KAJ7974595
LinkDB
All DBs
Position
3
Genome browser
AA seq
743 aa
AA seq
DB search
MAATATASSAGPRYAPTDPTLPKPWRGLVDGKTGFLYFWNPETNVTQYERPTSSAPMLKS
SSVPISSSVQVQQSSQGQRRAAADRYDRSTNGGTNAEVGSRSQQSAKGETFQSQNVPNGI
LGVGYGGSSRGHGGLDAGGGLSTESYCRRHEITIVGDNVPPPYTSFESTGFPSEILREVQ
SAGFPSPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLLPGFIHLKRSRNNPQLGPTVL
VLSPTRELATQIQAEAVKFGKSSRISCTCLYGGAPKGPQLRDIDRGIDIVVATPGRLNDI
LEMRRISLQQVAYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMFTATWPKEVRKIAA
DLLVNPVQVNIGNVDELVANKAITQHIEVLAPMEKHRRLEQILRSEDAGSKIIIFCSTKK
MCDQLARNLTRQFGAAAIHGDKSQGERDHVLNQFRTGKSPVLVATDVAARGLDIKDIRVV
VNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDTKHASDLIKVLEGANQRVPPELRD
MASRGGGMNRFRRWGSSGGRDGGRGGRSDSGYGGGRGGWGFTPSNGLGRGGGRGFDSDSR
DRLDRGYNAGRGRSRSRSPDKGSGWGDRNKSFNGDHRSRSRSLDRHERAPAVHERSPAVS
FHKAMMERTRSSPPVQHQRGLASPHGGGKENFGKSKNDSQQDWGRSTGGGRKYESFSGGT
RSSNYAEEEEGMIPDEEGMIRQD
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaactgcaactgcttcttcagcgggtccacgatatgcacctaccgaccccaca
cttcccaagccatggcgtggcctcgtggatggtaaaactgggtttctttacttttggaat
ccggagactaatgttacccaatatgagaggcctactagctcagctcccatgctgaagtct
tcttcagtgcctataagctcttcagtccaggttcaacaatcatctcaaggacagcgtcgt
gctgctgctgataggtatgacagaagcaccaatggtggaacaaatgctgaggttggatca
aggagtcagcagagcgcaaaaggtgaaaccttccagtctcaaaatgttccaaatggcata
cttggtgttggatacggtggttcttcaagaggtcatggaggattagatgcaggaggtgga
ttgtcgacagagtcatattgtcgtcggcatgaaatcactattgttggagataatgtgcct
ccgccttatacatctttcgagtctactggatttccatctgaaattcttagagaggtacaa
agcgctgggttcccttccccaactccaatccaggcacagtcatggcccattgctcttcaa
ggtagagatatagttgccattgctaaaacaggatcagggaaaaccttggggtacttactt
cctggatttattcacctcaagcgtagccgaaataaccctcagctgggtcccactgtgctg
gtattgtcaccaacaagagagttggcaacacaaatacaggctgaagctgtgaagtttggg
aaatcatcaagaatttcttgcacttgtttgtatggaggagcaccaaagggtccccaatta
agagatattgacagaggaatagatattgtggttgccacaccaggccgcctgaatgatatt
ctggaaatgagaagaattagcctccagcaagttgcttaccttgtgctagatgaggctgac
cggatgctggacatgggttttgaacctcaaataaggaagattgtgaaggaggttcctgct
cgtcgccaaactctcatgtttacagcaacatggccaaaggaggttaggaaaattgctgca
gatctactggtcaatcctgtccaagtcaatattggcaatgttgatgagcttgttgctaac
aaggccatcactcagcatattgaagtattggcaccaatggaaaaacatcgacgattagag
cagatattgcggtcagaggatgcaggatctaagataattattttttgttctactaagaag
atgtgtgatcaacttgctcgtaaccttacgcgccagtttggagctgcagccattcatggt
gacaaatctcagggtgagagagatcatgtgttgaatcagttccgaactgggaagtctcct
gtgcttgtagccacagatgttgcagctcgaggactggacatcaaggatatcagggtggtt
gtgaactatgacttccctacaggagtggaggattatgttcataggattggaaggacaggg
agggcaggagccactggattagcatacacattttttggtgaccaggatacaaagcatgcg
tcggatctcatcaaagtcttggaaggtgcaaatcaacgagtgcctccagaacttcgtgac
atggcatcacggggtggtgggatgaacagattcaggcgttggggttcttctggtggtcgt
gatggtggccgtggtgggcgtagtgattcaggatatggtggtggacggggtggatgggga
ttcactccttccaatgggctaggaagaggtggaggccgtggatttgacagtgactcgcgt
gacaggcttgatcgtggttacaatgctggaagaggacgtagccggagtcgaagccctgat
aagggatctggttggggcgatcgcaacaaaagcttcaatggtgaccaccgcagccgaagt
cgtagccttgataggcatgaaagggctccagcagtccatgaacgttccccagctgtcagt
tttcacaaggcaatgatggaacgaactcgttcctctcctccagttcagcaccagcgtggt
ctggcatcccctcatggtggtgggaaggaaaactttgggaaatcaaaaaatgattctcag
caggactggggaagatctacaggaggtggacggaaatatgaaagctttagtggaggtact
cgttcttccaattatgcagaagaagaggaaggcatgattcctgatgaagaaggcatgata
cgtcaagattag
DBGET
integrated database retrieval system
