KEGG   Quillaja saponaria (soapbark tree): O6P43_006401
Entry
O6P43_006401      CDS       T09778                                 
Name
(GenBank) putative DNA-directed RNA polymerase II
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
qsa  Quillaja saponaria (soapbark tree)
Pathway
qsa03020  RNA polymerase
qsa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:qsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    O6P43_006401
  09124 Replication and repair
   03420 Nucleotide excision repair
    O6P43_006401
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:qsa03021]
    O6P43_006401
   03400 DNA repair and recombination proteins [BR:qsa03400]
    O6P43_006401
Transcription machinery [BR:qsa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     O6P43_006401
  RNA polymerase III system
   RNA polymerase III
     O6P43_006401
  RNA polymerase I system
   RNA polymerase I
     O6P43_006401
DNA repair and recombination proteins [BR:qsa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      O6P43_006401
SSDB
Motif
Pfam: RNA_pol_Rpb5_N RNA_pol_Rpb5_C MCEL_TPase DUF7403 Homeobox_KN
Other DBs
NCBI-ProteinID: KAJ7976648
UniProt: A0AAD7Q8A4
LinkDB
Position
3
AA seq 250 aa
MEEVVEGNGIEGLGELNREEQGRCLSSYVDEAGSMESHRYYLSRRTVMEMLRDRGYSVPS
SEIDLSLPQFRIIHSQNPEIDRLRFSATHRTDPSKRVLVVFCGPSIVKVNVIRGVATQIV
NREGLTGIILIVQNQVTNQALKAVKLFQFKVENFQITDLLVNITKHVLKPKHRVLTDREK
QNLLKKYNIEEKQVFSWRTQYTICMTSMKLLRLLQQDAIARYYGLERGQVVKVTYGGEIT
QLHVTYRCVW
NT seq 753 nt   +upstreamnt  +downstreamnt
atggaagaagttgtggaaggtaatgggattgaaggcctaggagagttgaatagggaagaa
cagggtcggtgcttgagtagctatgtggatgaagctggtagcatggaaagtcacagatac
tatctgtcacgtcgaactgtgatggaaatgcttagagatagaggttattcagttccctcc
tctgaaattgatctctctctacctcaatttcgaatcatccatagccaaaatcctgagatt
gaccgcctccgattttcagccactcatcggacagacccttccaagagggttttagttgtt
ttctgtggtcccagtatagtaaaagttaatgtgatccgtggcgtagcaactcagattgtt
aacagagaaggtctaactgggattatattgatagtacagaaccaagtaactaaccaggct
ctgaaagctgtaaagctttttcagttcaaggttgaaaattttcagatcactgacttgctt
gtaaatattacaaagcatgtcttgaagccaaagcatcgggtattgactgatcgagagaaa
cagaatcttctaaagaagtacaatatagaagaaaagcaggtctttagctggcgaactcag
tatacaatctgcatgacatcaatgaagcttctccgattgttacaacaagatgcaattgcg
cggtactatggacttgagagggggcaagtggtgaaagttacatatggaggtgaaatcacc
cagttgcatgtcacttaccgttgtgtctggtga

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