Quillaja saponaria (soapbark tree): O6P43_006502
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Entry
O6P43_006502 CDS
T09778
Name
(GenBank) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O6P43_006502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_006502
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
O6P43_006502
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Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
KAJ7976773
UniProt:
A0AAD7Q8B2
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All DBs
Position
3:28388679..28394331
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AA seq
318 aa
AA seq
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MGLPNDSGDLSSEIDVDAFRRLFPLRFHERHLAESIRPDARPLGRARDTTIALGAVASAN
GSALAKIGSTAMLAAIKMEVMTPSKESPDEGCIAIDFHMPPICSPIVRPGRPAEVAPVVS
KRLSDTISSSGMIDLKELSLVSGKAAWIGIPGKHSYRLHSSISRVDMMYTAWMQMVLYLM
LRYFSAVAALSHLHVPAVSLNDDGKIVLMLEDDGQKLATEPVNKDKRKLTLRSIPFSLTC
ILHKNYILADPTAEEEYIMETLVTVVLDSTSQLISLYKPGGPVLAYTSAVQDCVALTRQR
VKELQKIIDEANSGMEVD
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggggctaccaaatgattctggggatttatcatctgaaattgatgttgatgcctttaga
cgactgtttccacttcgatttcacgagcgtcaccttgctgaatctatacgtcctgatgcc
agaccacttggaagagctagagatactactattgcacttggggctgttgcatctgctaat
ggatcagcactggcaaagattggctcaactgcaatgttggctgctatcaaaatggaagtt
atgactccctcgaaggagtcaccggatgagggctgcatagccattgatttccacatgcct
ccaatttgttctccaattgttaggcctggcaggccagctgaggtagcaccagttgtgtca
aagcggttatctgacactatttcaagttctggcatgattgatttaaaagaattgtctttg
gtcagtggaaaagctgcatggataggcatacctggtaagcattcttatcgtctgcattca
tcaatcagccgtgttgatatgatgtatactgcttggatgcagatggttctctatttgatg
ctgcgttacttttcggcagttgctgccttatctcatttgcatgtccctgctgtttcttta
aatgatgatgggaaaatagtgctcatgttggaggatgatggacaaaagcttgcaacggag
ccagttaacaaggataagaggaagcttacactaagaagcatcccattttcattaacatgc
atacttcacaaaaattacatcttggcagatccaactgcagaggaagaatacatcatggaa
acccttgtgactgtggttctggattcaactagtcaactcatatctctttacaagccaggt
ggaccagttcttgcttatacatcagctgtccaggattgtgttgcattgactaggcaaaga
gtaaaggagctacagaagattatagatgaagctaattctggtatggaggttgactag
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