Quillaja saponaria (soapbark tree): O6P43_007266
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Entry
O6P43_007266 CDS
T09778
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
O6P43_007266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsa03041
]
O6P43_007266
Enzymes [BR:
qsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O6P43_007266
Spliceosome [BR:
qsa03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
O6P43_007266
Complex B
O6P43_007266
Complex C
U2 SnRNP specific factors
O6P43_007266
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
UBA_HOIP
DUF3006
Motif
Other DBs
NCBI-ProteinID:
KAJ7977676
UniProt:
A0AAD7VIZ3
LinkDB
All DBs
Position
3
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AA seq
768 aa
AA seq
DB search
MSKRKFGFEGFGINREATYNFERSQAPQRLYVPPSSRSQSHDNYEDTDLDNIKYDDNDND
KDGDNDNGGHDEIDPLDAFMEGIHEEMKAPRPKTNEKVEDKYRDDEEDDPMESFLRAKKD
IGLTLASDALHAGYDSDEEVYAAAKAVDAGMLEYDSDDNLVVVDKKKIEPIPAMDHSSID
YEPFNKDFYEEKPSISGMSEQDIAEYRKSLAIRVSGFDVPRPIKTFEDCGFSPQLMNSIK
KQGYEKPTSIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPIIVHIMDQPELEKEEGPIG
VICAPTRELAHQIYLEAKKFAKSHGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLID
MLKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQLRPDRQTLLFSATMPHRVEKLA
REILTDPIRVTVGEVGMANEDITQVVQVIPSDSEKLSWLLEKLPGMIDEGDVLVFSSKKA
NVDEIESQLAQRAFKVAALHGDKDQASRMEILQKFKSGIYHVLIATDVAARGLDIKSIKS
VVNFDIARDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNVTMEL
MDLAMKDGRFRSKRDARKGGGKKGRGRGGGSSGQGVRGVDFGLGIGYSQESNTIPSNPVP
GRSTALNLLRTGMMSQFRGNFIAASSNSQNQGFGNSTSMNANNRPALRGFVSGGSIGGVS
NLTQTTTSVGSTMPGVNTSSQKSGDNASQKNSESSKPRERRRPSGWDR
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaggaaatttggattcgaaggttttgggataaaccgtgaagcaacctataat
tttgagcgatctcaagctcctcagcgactatatgtacctccttcttcgcgttcacagagt
cacgacaattacgaggatacggaccttgacaatattaaatatgacgataatgataatgac
aaggatggtgacaatgataatggtggtcatgacgaaattgatccactggatgcgtttatg
gagggaattcatgaagagatgaaggcaccacgtccaaagacgaatgagaaggtggaggac
aagtatagagatgatgaggaagatgatccgatggagagctttttgagagcgaagaaagat
atagggttgactctggcttctgatgctcttcatgccgggtatgattctgatgaggaggtt
tatgcagctgcaaaggcggtggatgccggtatgctagagtatgattccgatgataatcta
gtggttgtggataagaagaagattgagccaattccagcaatggatcacagttccatagac
tacgagccgtttaataaggacttttacgaggagaaaccttcaatatcaggtatgagtgag
caggatattgctgaataccggaagagtttggctattcgggtatcaggttttgatgttcct
aggccaattaagacatttgaagactgtggtttttctccacaactcatgaattctatcaaa
aaacaagggtatgagaagcctacatcaatacagtgccaagctttaccaatagtactctct
ggtagagatgttattggtatagcaaaaactggttctggtaaaactgctgcttttgttctt
cccataattgtacatattatggatcagccagaacttgagaaagaagagggtcctattgga
gtgatatgtgcacctactcgagaactagcacatcaaatatacttggaggccaagaagttt
gcaaagtcacatgggatccgtgtctctgctgtctatggtggaatgtccaaacttgagcag
tttaaagaactcaaggcaggctgtgagatagttgttgcaactcctggcagattaatagac
atgctaaagatgaaggcactgacaatgttgagagcgacttacctggtacttgatgaggct
gatcggatgtttgaccttggatttgagccacagattaggtctattgttggtcagcttagg
ccagaccgccaaaccttacttttttcagcaacaatgccccatagagttgaaaagttggct
agggaaatcctcactgatcccataagagttactgtgggggaggtcggtatggcaaatgag
gatattacccaagttgttcaagtaattccttctgattcggagaaattgtcatggcttctt
gaaaagctgcccggaatgatcgatgaaggtgacgttttagtgttttcttccaaaaaggcc
aatgttgatgagattgaatcacaattggctcagagagcctttaaagttgcagcgcttcat
ggtgacaaagatcaagcttctcggatggaaattttgcaaaaatttaaatctggcatctac
cacgtgcttattgcaactgatgttgctgctcgtggtcttgatatcaagtcaatcaagtca
gtggtcaacttcgatattgcaagagacatggacatgcatgtccatcgtattggaaggaca
ggtcgtgctggtgacaaagatggggttgcatacactcttattactcagaaagaggcacgc
tttgctggtgaattggttaacagcttaattgctgctggtcagaatgtgaccatggagttg
atggatctagccatgaaggatgggagattcaggtccaaacgtgatgcaagaaaaggaggt
gggaaaaagggtcgagggaggggtggtggcagtagtggtcaaggtgtgcgtggagtggat
tttggcttgggtattggatatagtcaagaatccaacaccattccatctaacccggttcca
ggtcgatctactgccctaaatttgctgaggacaggaatgatgtcgcaatttaggggtaac
ttcattgctgcttcatcaaattctcagaatcaaggctttggtaacagtacaagcatgaat
gccaacaacaggccagcactccgtggctttgtatctggtggttcaattggtggagtttca
aatctcactcagacaacaacttcagtcggttctaccatgccaggtgtgaacaccagtagt
cagaaatctggagataatgccagtcagaagaactcagagagttctaaacctagagaaagg
cgaaggccatctggctgggatcgataa
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