Quillaja saponaria (soapbark tree): O6P43_007280
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Entry
O6P43_007280 CDS
T09778
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
O6P43_007280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsa03041
]
O6P43_007280
03009 Ribosome biogenesis [BR:
qsa03009
]
O6P43_007280
Enzymes [BR:
qsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
O6P43_007280
Spliceosome [BR:
qsa03041
]
Complex A
U2 snRNP components
U2 related factors
O6P43_007280
Complex B
O6P43_007280
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
O6P43_007280
Ribosome biogenesis [BR:
qsa03009
]
Eukaryotic type
90S particles
Helicases
O6P43_007280
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
SRP54
ResIII
FtsK_SpoIIIE
ABC_tran
AAA_7
AAA_33
T2SSE
AAA_30
NACHT
AAA_29
Motif
Other DBs
NCBI-ProteinID:
KAJ7977693
LinkDB
All DBs
Position
3
Genome browser
AA seq
727 aa
AA seq
DB search
MGTERKRKVSLFDVVDDASAKMVKANGGVANMNNNVGNSLINKWTGRPFSQRYYEILDKR
KTLPVWHQKEEFFQVLKANQTLILVGETGSGKTTQIPQFVLDAVDLETPDKRKKMMIACT
QPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLL
ERYKVIVLDEAHERTLATDVLFGLLKEVLRNRTDLKLVVMSATLEAEKFQGYFSGAPLMK
VPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHTCEPAGDILVFLTGEEEIEDACRKISKE
IANMGDQVGPVKAVPLYSTLPPAMQQKIFDPAPPPIKEGGPPGRKIVVSTNIAETSLTID
GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFH
NDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDD
DGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAAD
EAKSRFGHIDGDHLTLLNVYHAYKQNNEDQSWCFENFVNHRALKSADNVRQQLVRIMSRF
NLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKP
EWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLANFPQCEAKRVLERLYKKREKER
EEIRSRK
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgggtactgagagaaaaaggaaagtcagcttattcgatgtggtggacgacgcctcggcg
aagatggtcaaagccaatggtggggttgctaacatgaacaacaacgttggtaacagtttg
atcaataagtggactgggaggccgttctcacagaggtattacgagatattggataagaga
aagactctacctgtttggcaccagaaggaggagttcttccaggttttgaaggccaaccag
actttgatcttggttggtgagactggtagtggaaaaactacccagatcccccagtttgtt
ttagatgctgttgatttagagactccagataaacgtaagaagatgatgattgcatgcact
caacctcgtagagtggctgctatgtctgtttccagacgtgttgctgaagagatggatgta
actattggagaagaagttggttatagcatcagatttgaagattgcagtagtgcaagaaca
gttctgaagtatctaaccgatggtatgcttttaagagaagcaatgacagatccactattg
gaacgatacaaagtaattgtacttgatgaggcacatgaaagaactctggcaacagatgtg
ctttttgggcttctgaaggaagtgcttagaaatagaactgatctaaagctggttgttatg
agtgcaactcttgaggctgaaaagtttcagggctatttcagtggtgcacctcttatgaaa
gttcctggaaggcttcacccggtggagattttctacacccaggaacctgaaagggattac
ctggaagcagcgattcggacagttgtgcagatacatacatgtgaacctgcaggagatata
cttgtttttcttactggagaggaggagatagaagatgcatgtcgcaagatatcaaaagaa
attgccaacatgggagaccaagtgggccctgtgaaagctgtacctctatactctactctt
cctccagccatgcagcagaagatatttgatcctgcacctcctcctatcaaagagggcggg
cctccaggaaggaagattgtggtatcaacaaatattgccgaaacttctttgaccattgat
ggaatagtctatgttattgaccctggatttgccaagcaaaaggtttataacccacgagtt
cgtgttgagtctttgttggtatctccaatatcaaaggcaagtgcacaccagagatctggg
cgagcaggaagaactcagccaggaaaatgttttagactttacactgagaaaagtttccac
aatgatcttcagcctcagacttatcctgaaattttgagatctaatcttgccaatacagtt
cttaccttaaagaagctggggatagatgatttggtgcattttgatttcatggatcctcct
gctcctgagaccttgatgcgcgcattggaagtattgaattatttgggtgcattggatgat
gatggtaacttgacaaagctgggtgaaattatgagtgaatttcccttggacccacagatg
tcaaagatgcttgttgtcagtcctgaattcaactgttcaaatgagatcctgtcaatttct
gccatgctttcagtacccaattgctttgtccggcctagggaggcacagaaagctgcagat
gaggcaaaatctaggttcgggcacattgatggagatcacctcacacttctgaatgtctac
catgcttacaagcaaaacaatgaggatcagtcttggtgctttgaaaacttcgtcaatcat
cgggcactgaaatctgctgataacgttagacaacagctagtgaggatcatgtcccggttt
aacctgaagctatgcagcactgacttcaacagccgtgactattatgtcaatataagaaag
gctatgcttgctggatattttatgcaggttgctcacttggagaggacgggtcactacttg
acagtgaaagacaatcaggtcgtgcatttacatccatctaattgcctggatcacaagcct
gaatgggtcatttacaatgaatatgttctaaccagtcggaatttcatacgtacagtgaca
gacattcgtggggaatggctagttgatatagccccacactactacgatttggcaaacttc
cctcagtgtgaggctaaacgtgttctggaaaggctctacaagaagagagagaaggagaga
gaggaaatccgaagcaggaaatga
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