Quillaja saponaria (soapbark tree): O6P43_007805
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Entry
O6P43_007805 CDS
T09778
Name
(GenBank) DExH-box ATP-dependent RNA helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O6P43_007805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_007805
03041 Spliceosome [BR:
qsa03041
]
O6P43_007805
03009 Ribosome biogenesis [BR:
qsa03009
]
O6P43_007805
03016 Transfer RNA biogenesis [BR:
qsa03016
]
O6P43_007805
Enzymes [BR:
qsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
O6P43_007805
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
O6P43_007805
Spliceosome [BR:
qsa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
O6P43_007805
Complex C
U4/U6.U5 tri-SnRNP related factors
O6P43_007805
Ribosome biogenesis [BR:
qsa03009
]
Eukaryotic type
Pre-60S particles
Helicases
O6P43_007805
Transfer RNA biogenesis [BR:
qsa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
O6P43_007805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
KAJ7969463
UniProt:
A0AAD7PVK4
LinkDB
All DBs
Position
4
Genome browser
AA seq
991 aa
AA seq
DB search
MEESPPLGKRKEPESSDVTETPSQQSPSNKRRNLTRTCVHEVAVPSGYTSTKDDSVHGTL
SNPEYNGDTAKTYPFTLDPFQQVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ
RVLYTSPLKALSNQKYRELSQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVL
KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNLHKQP
CHVVYTDFRPTPLQHYVFPMGGNGLYLVVDENEQFREDNFVKLQDTFSKQKLGDGNRSGN
GKVNGRIAKGGNASGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNTQE
EKDTVEHVFRNAVLCLNEEDRSLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGL
VKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGIC
IIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFHQFQ
YEKALPDIGKKVLELENEAASLDASGEAEVAEYHKLKLDIAQLERKMMSEMTRPERILYF
LLPGRLVKIREGGTDWGWGVVVNVVKKPSAGIGVLPSRGGGGYIVDTLLHCSPGLTESSS
RPKPCPPRPGEKGEMHVVPVQLPLISALSKLRIAIPPDLRPLEARQSVLLAVQELGTRFP
QGLPKLNPVKDMGIKDPDIVKLVSQIEELEKKLYGHPLHKHQDMDQIRCFQRKAEVNHEI
QQLQSKMRDSQLLKFRDELKNRSRVLRKLGHIDADGVVQLKGRAACLIDTGDELLVTELM
FNGTFNDLDHHQVAALASCFIPGDKSSEQIQLRTELSRPLQQLQDSARRIAEIQQECKLD
INVDEYVESTVRPYLMDVIYSWSKGASFADVIQMTDIFEGSIIRSARRLDEFLNQLRASA
HAVGEVDLENKFAAASESLRRGIMFANSLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatcaccacctcttggcaaacgaaaggagcctgagagttcggatgtcactgaa
actccaagtcaacaatctccctcaaataaacgacgcaatttgacgaggacatgcgtgcat
gaggtcgctgtgccaagtgggtacacttcaaccaaggatgattccgttcacgggaccctg
tcaaatcccgagtacaatggagatacggcaaaaacctacccattcacgctcgatcctttt
cagcaggtttccgttgcatgcttagaacggaatgagtctgttctggtctctgcacatact
tctgctggtaaaaccgcagtggccgagtatgcaattgcaatggcttttagggataagcag
agggttttatatacttcgcccttgaaagctttgagcaatcagaagtatagagaactcagt
caggagtttaaagatgtggggttgatgaccggtgatgttactctttcacctaatgctagt
tgtctggtcatgacgaccgagattcttaggggaatgctttacaggggttcagaggttctg
aaggaagtcgcatgggtcatatttgatgaaattcattatatgaaggaccgggaaagaggt
gttgtttgggaagagagtattatatttttacctccggctatcaaaatggttttcctttct
gcaacaatgtcaaatgccacagaatttgcggagtggatatgtaatctgcacaaacagccg
tgtcatgttgtgtacacagattttcgtccaactcctttgcagcactatgtttttcctatg
ggtggtaatggcctgtatttagtggtagatgagaatgagcagttcagagaggacaatttt
gtaaaactgcaagatactttctccaagcaaaaattaggtgatgggaacaggagtggtaat
ggcaaggtcaatgggagaattgcaaaaggaggaaatgcttctggtggctctgatatatac
aagattgtcaaaatgattatggaacggaaattccaaccagttatcattttcagcttcagt
agaagagaatgcgaacaacatgcaatgtccatgtccaagcttgatttcaatacacaagag
gaaaaagatacagttgagcatgttttccgaaatgcagtactctgcctgaatgaggaagac
agaagcttacctgccattgagttgatgttgccactactccagcgagggattgccgttcat
cattctggtcttcttcctgtaataaaagaattggtggaacttcttttccaggaaggcctt
gtaaaagccctttttgccactgagacatttgcaatgggtttaaatatgcctgcaaaaact
gttgttttcacagctgttaagaagtgggacggtgatagtcaccgctatattggatctggt
gaatatatccagatgagtggaagggctgggcgccgcgggaaagatgatcgtggtatttgt
atcataatggttgatgaacagatggagatgaatactctcaaggacatggttttgggtaaa
cctgctcctttagttagtacattcaggctgagctactactcaattttgaatttgatgagc
cgcgctgaaggacagtttactgctgaacatgtaataaggaactcattccatcaatttcag
tatgaaaaggccttacctgatatagggaaaaaggttttggagttggagaatgaagcagca
tctcttgatgcttcaggggaggctgaagttgctgaatatcataagctaaaactagatata
gctcagcttgagaggaagatgatgtcagagatgacaaggcctgaaaggattctttatttt
cttcttcctggtcggctggtaaagataagggaaggtggaactgattggggatggggtgtt
gtagtcaacgttgttaaaaagccctcagcggggataggtgtattgccttcacgtggtggt
ggaggctatatcgtggatactttacttcattgctcaccaggtttgactgaaagcagttca
cgaccaaaaccatgtccaccccgacctggagagaagggtgaaatgcatgtggttcctgtt
cagttaccattgatctctgccctaagtaaactgaggatagctatacctcctgatctccgc
ccgttggaagcaaggcaaagtgtactgcttgctgtacaggagctggggactcgttttcca
caaggccttccaaagcttaaccctgtaaaggacatgggcattaaagatccagatattgtt
aagctagtcagtcaaatagaggaacttgaaaagaagttatatggtcatcctctgcataag
catcaagacatggatcagattagatgctttcagaggaaagcagaggtgaatcatgaaatt
caacaactacagtcgaaaatgagagattcccagttactaaagttccgtgatgagctgaag
aaccgctcacgggtcttgagaaagcttggtcatattgatgctgatggtgttgtccagttg
aagggaagggcagcctgcttgattgacactggcgatgaactccttgtcactgaactgatg
tttaatggtacttttaatgatctcgaccatcaccaagttgcagctcttgcaagctgtttc
ataccaggagacaaatcaagtgaacagatacaattgagaacggagctttcgagacctttg
cagcagctccaggacagtgccaggagaatagcagagatacaacaagaatgcaaattggat
attaatgttgatgaatatgtggaatcaacagtaaggccctacttgatggatgtgatctat
tcttggtcaaagggtgcgagttttgcagatgttatacaaatgacagatatctttgagggt
agtattattagaagtgctagaaggcttgatgagtttttgaaccagttgcgtgcctctgct
catgctgtgggagaagttgacttggagaacaagtttgcagctgccagtgaaagccttcgg
cgaggtataatgtttgcaaactctctgtatctgtga
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