Quillaja saponaria (soapbark tree): O6P43_008523
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Entry
O6P43_008523 CDS
T09778
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O6P43_008523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_008523
03012 Translation factors [BR:
qsa03012
]
O6P43_008523
Enzymes [BR:
qsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
O6P43_008523
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
O6P43_008523
Translation factors [BR:
qsa03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
O6P43_008523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
AAA_19
T2SSE
AAA_16
NACHT
ATPase
Myosin_head
Dicer_dimer
ABC_tran
PhoH
AAA_30
Motif
Other DBs
NCBI-ProteinID:
KAJ7970316
UniProt:
A0AAD7PW00
LinkDB
All DBs
Position
4
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AA seq
1214 aa
AA seq
DB search
MPSAAIFQGYFRTTATTSSPFLTMSVKNSIVLSHKTRVNLKPCLLYRSMRNQSIGLRKLY
VPPYSKRVGVVYLAASSRSVDVDWKVGQGVGFRHRSVSFPFWHQQSSNYGRFAYQDVTSD
DSDHEFGSSQQQMSGSTVDNIDEWKWKLTMLLRNKDELEVVSREKKDRRDFAQLSALATR
MGLHSHQYARVVVFSKAPLPNYRSDLDDKRPQREVILPFGVHREVDAHLKAHLSQKSMRR
ENFSNDSTTRSSSGATDERLYERHEPLMQNSVIMEKVLRRKSLQLRNQQQDWQESPEGKK
MLEFRKNLPAYKEKDALLRAISENQVVVVSGETGCGKTTQLPQYILEHEIEAACGAMCSI
ICTQPRRISAMSVSERVAAERGEKLGESVGFKVRLEGIKGRDTRLLFCTTGVLLRRLLVD
RNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLSRRPEMRLILMSATLNAELFSSYFGGAP
MLHIPGFTYPVRTHFLENILEVTGYRLSPSNQIDDYGQEKSWKMQKQAQSFRRRKSQIAS
AVEDALEAADFKGYGLRTKESLSCWNPDSIGFNLIEHVLCHIVSKERPGAILVFMTGWDD
INSLKDQLQAHPLLGDPTRVLLLACHGSMASTEQRLIFDKPDEGVRKIVLATNMAETSIT
INDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPKCV
YDAFADYQMPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEALSVQNAVEYLKIIGA
LDDNENLTVLGHKLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKD
LAESAKAQFSSREYSDHLALVRAYDGWKDAERRQAGYEYCWRNFLSAQTLKAIDSLRKQF
FFLLKDIGLVDHSSENCNMWSHDEHLTRAIICAGLFPGICSVVNKEKSIALKTMEDGQVL
LYSNSVNASVPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGNIARGGLDGHMKM
LGGYLEFFMKPALAETYLSLKRELEELIQKKLLDPKLDVQSQSEILSAVRLLVSEDQCDG
RFVFGRQVLAPAKKATKETLVEKLTKSAARVEGDNFKNQLQTLLARAGHEQPTYNTRQLK
NNQFCSTVIFNGLNFVGQPCSSKKLAEKDAAAEAILWMKGETRSSIDDIDHMSMLLKKSK
KKRRATSLNGAKWS
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgccctccgcggccatttttcagggctatttccgaaccaccgctactacctcatctcct
ttcctaaccatgtctgtcaaaaattccattgtcttgtcccacaaaacccgtgtaaattta
aagccttgtcttttataccgttcaatgagaaaccaatccattgggctcaggaagttgtac
gtgccaccatattctaagcgggtaggggttgtgtacttggcggcgtcttccaggtcggtt
gatgtggattggaaagtggggcagggtgtgggtttcaggcatagaagcgtttcttttccg
ttttggcatcagcagagctcaaattatggtcgctttgcgtatcaggatgtgactagtgat
gattctgaccatgaatttgggtcttcccagcagcaaatgtctggttcaactgttgataac
attgatgagtggaagtggaagctaaccatgcttcttcgaaacaaagatgagctagaagtg
gtgtcaagagagaaaaaggacagacgtgattttgcgcaactttcagctttggcgactaga
atgggtttacacagccatcaatatgcaagagttgttgtcttcagcaaagctcctttgcca
aattacagatctgatctagatgataagcgcccacaaagagaggttatcttaccttttgga
gttcatagagaagtagatgctcatctcaaagctcatctttctcaaaagtcaatgaggagg
gaaaacttttcaaatgattctacaacaagatcaagtagtggtgctactgatgaacgtctt
tacgagcggcacgagcccttgatgcagaatagtgttatcatggaaaaagtcctaagaaga
aaaagcttgcaactgcgtaatcagcaacaagattggcaggaatctcctgaagggaaaaag
atgcttgaatttcgtaaaaatctccctgcatacaaggagaaggacgcattactacgagcc
atttcagaaaaccaggttgttgttgtctcaggtgaaactggttgtggtaaaaccactcaa
cttcctcaatacattttagagcatgagattgaagctgcttgtggagccatgtgtagcata
atttgcactcagcctagaagaatatctgctatgtcagtttctgaaagagttgctgcagag
cgcggggaaaaattgggagaatctgttggtttcaaagttcggttagagggaataaaagga
agggacactcgccttctattttgcaccacaggcgtcttattgcgaaggttacttgttgac
aggaatttaaaaggtgtaactcatgttattgttgatgagatccatgaacgtggaatgaat
gaagattttcttcttatagtcttgaaagatcttctatcgcgtagaccagagatgaggttg
attttaatgagtgcaaccttgaatgcggagcttttttcttcctactttggtggtgctcca
atgctacatattccgggttttacatacccagttcgaacacattttctggagaatattctt
gaagtgactggatatcgattgagtccttccaatcaaattgatgattatggtcaagagaag
tcgtggaaaatgcagaaacaagctcaatccttcagaagaagaaagagccagattgcttct
gctgttgaggatgcccttgaagctgccgactttaagggatatggactacgcaccaaggag
tcgttatcctgctggaatccggactcaattggttttaatcttattgagcatgtgctttgc
cacatagtcagcaaagaaaggcctggtgctatcctggtttttatgactggttgggatgac
ataaactctctaaaggaccagctgcaagctcatcctctcttgggagatcctaccagagta
ttgcttcttgcatgccatggttccatggccagcactgaacagaggttgatattcgataag
cctgatgaaggagtgaggaaaatagtcctagctaccaatatggctgagaccagtattaca
atcaatgatgttgtttttgtggtagattgtggaaaggcaaaagaaacgtcatatgatgcg
ttaaataatacaccttgtttgcttccatcctggatctcaaaggctgctgcccggcagaga
agaggaagagctggtcgtgttcaacctggcgagtgttaccatctctatcccaaatgtgtt
tatgatgcctttgctgattatcagatgccagagcttttaagaacaccattgcagtcctta
tgcctgcaaatcaaaagccttcaacttgggagtatttcggagtttctgtctagggccttg
cagccgccagaagctctatcagttcaaaatgctgtggaatacttgaagattattggggct
ttggatgataacgaaaacctgacagttctagggcacaagttgtcaatgcttcctgttgaa
ccaaagcttgggaagatgctcattttgggggccattttcaactgtctagatcctgtaatg
actgttgttgctggtcttagtgttagagacccgttcctgatgccatttgacaaaaaagat
cttgcagagtctgcaaaagcccagttttcatctcgtgaatacagtgatcatcttgcactt
gttcgtgcttatgatggctggaaagatgctgaaagacgtcaagctggttacgagtattgt
tggagaaattttctttctgcacaaactcttaaagccattgactctcttcgcaagcagttc
tttttcttactgaaggatatcggtttggttgatcacagctctgaaaactgcaatatgtgg
agccatgatgagcatcttactcgggcaatcatctgtgcgggtttgtttcctggaatatgc
tctgttgtgaataaagagaaatcaatagcattgaaaacaatggaggacggccaggttctt
ctgtactcgaactccgtcaatgccagtgtaccaaagattccatatccatggctagttttt
aacgaaaaggtgaaagtgaactcagtgttcctccgggattcaactggtgtatctgattct
gtgctgctcttatttggtggaaacattgccagaggtggactagatggtcatatgaaaatg
ttgggaggatacttggagttttttatgaagcctgcattagcagaaacttacttaagctta
aagagggagctggaagagttaattcagaagaaacttctggatcccaagttggatgtacaa
tctcagagtgaaatcctttcagcagtaagattgttggtctcagaggaccagtgcgatggt
agatttgtctttggccggcaggtgttggcaccggcaaaaaaggcaacaaaggagacactt
gtggaaaagttaaccaaaagtgctgctagggtcgagggtgataatttcaagaatcagctg
cagacattgcttgcccgtgctggacatgaacaacccacttacaatacaaggcaactgaaa
aacaaccaattttgttctaccgtgatattcaatggcttgaactttgttggccagccttgc
agcagcaagaaacttgcagaaaaggatgctgctgcagaggctattttgtggatgaagggg
gagacacgttcatcaattgatgatattgaccatatgtcaatgcttctaaagaagagcaaa
aagaaacgtcgggcaacttcactcaatggtgctaaatggagttaa
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