Quillaja saponaria (soapbark tree): O6P43_008943
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Entry
O6P43_008943 CDS
T09778
Name
(GenBank) putative Dead box ATP-dependent RNA helicase
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
O6P43_008943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsa03041
]
O6P43_008943
03009 Ribosome biogenesis [BR:
qsa03009
]
O6P43_008943
Enzymes [BR:
qsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O6P43_008943
Spliceosome [BR:
qsa03041
]
Complex A
U1 snRNP components
U1 related factors
O6P43_008943
Complex B
O6P43_008943
Ribosome biogenesis [BR:
qsa03009
]
Eukaryotic type
Pre-60S particles
Helicases
O6P43_008943
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
KAJ7970819
LinkDB
All DBs
Position
4
Genome browser
AA seq
742 aa
AA seq
DB search
MAATATASSAGPRYAPHDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSSAPKSSS
VPISSSVQVEQSSQEQRHFADDRNDRSTNGGSNAEVGSRNQQSATGEIYHSHNAPNGTLG
AGHGGGGGSSSRGHGGSDAGSRLSTESYRHHHEITTIGDNVPPPFMSFESTGFPSELLRE
VQNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFVHLKRSRNNPQLGPT
VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLRDIDRGADIVVATPGRLN
DILEMRKISLQQVAYLVLDEADRMLDMGFEPQIRKVVNEVPARRQTLMFTATWPKEVRKI
AADLLVNPVQVNIGNVDELVANKSITQHIEVLAPLEKHRRLEQILQSQDPGSKIIIFCST
KKMCDQLARNLTRQFGAAAIHGDKSQGERDHVLNQFRTGRSPVLVATDVAARGLDIKDIR
VVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYASDLVKVLEGANQQVPPEL
CDMASRGGGMNRFRHWGSGSGGRDGGRGGRSDLGYGGGRSDSGYGGYGGGRGDSGYGGGR
GGRGFTPSNGPERSGGRGFDYDSHDRLDRGYHAGLERGRSQSRSPDKGSGWGDYNKSFTR
DRSRSRSLDRNERAPPGREHSPVYSFHKAMMERGRSSPSQAQRGPASPHGGGKENFGKSN
YEEEEGMIPDEEGMIPQYLGLA
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggccgcaactgcaactgcttcttcagcaggtccacgatatgcacctcatgaccccaca
cttcccaaaccatggcgaggtcttgtggacggtaaaactgggtatctttacttttggaat
ccggagactaatgttacccaatacgagaggccttctagctcagctccaaagtcttcttca
gtgcctataagctcttcagtccaggttgaacaatcatctcaagaacagcgtcattttgct
gatgataggaacgacagaagtacaaatggtggatcaaatgctgaagtcggatcaaggaat
cagcagagtgcaacaggtgaaatttaccactctcataatgctccaaatgggacacttggt
gctgggcatggtggtggtggtggttcttcttcaagaggtcatggaggatcggatgcagga
agcagattgtcaacagagtcgtaccgtcatcatcatgaaatcactactattggagataat
gtgcctcctccttttatgtcatttgagtctactggctttccatctgaacttcttagagag
gtacaaaatgctggcttctctgccccaacaccaattcaggcacagtcatggcccattgcc
cttcaaagtagggatattgttgccattgctaaaacgggatcaggaaaaaccttggggtac
ttaattcctggatttgttcacctcaagcgaagccgaaataaccctcaactgggtcccact
gttttggtattgtcaccaacaagggagttggcaacacagatacaggatgaagctgtgaag
tttggaaaatcatcaagaatttcttgcacttgtttgtatggaggagcaccaaagggtccc
caattaagagatattgacagaggagcagatattgtggttgcgacccctggccgcttgaat
gatattctggagatgagaaaaattagcctccagcaagttgcttaccttgtgctagacgag
gctgaccgaatgctggacatgggttttgaacctcaaataaggaaggttgttaacgaggtg
cctgctcgtcgccaaactctcatgtttacagcaacatggccaaaggaggttaggaaaatt
gctgcagatctacttgtcaatcctgtccaagtcaatattggcaatgttgacgagcttgtt
gctaacaagtccatcactcagcatattgaagtattggcaccattggagaaacatcgccgt
ttggagcagatattgcagtcacaggatccaggctcgaagataattattttttgttctact
aagaagatgtgtgatcaacttgctcgtaaccttacccgccagtttggagctgcggctatt
catggtgacaaatcccagggtgagagagatcatgtgttgaatcagtttcgaactgggagg
tctcctgtgcttgtagccacagatgttgcagctcgaggactagacatcaaagatatcagg
gtggtagtgaactatgacttccctacaggagtggaagattatgttcacaggattggaagg
acagggagggcaggagccactggactggcatacacgttttttggtgaccaggatgccaag
tatgcatcggatctcgtcaaagtcttggaaggtgcaaatcaacaagtgcctccagaactt
tgtgacatggcatcacggggtggtgggatgaacagattcaggcattggggctctggttct
ggtggtcgtgatgggggccgtggtggacgtagtgatttgggatatggtggtggacgtagt
gattcaggatatggtggatatggtggtggacgtggtgattcaggatatggtggtggaagg
ggtggacggggatttactccttcaaatgggccagagagaagtggaggccgtggatttgac
tatgactcacatgacaggttggaccgtggttaccacgctggactagaaagaggacgtagt
cagagtcgaagccctgataagggatcgggttggggtgattacaataaaagctttacccgt
gaccgcagccgaagtcgtagccttgatagaaatgaaagggccccgccaggccgtgaacat
tcccctgtttacagtttccataaggcaatgatggagcgaggtcggtcatctccatctcaa
gcccagcgtggtccagcatcccctcatggtggtgggaaggaaaactttgggaaatcaaat
tatgaagaagaggaaggcatgattcctgatgaagaaggcatgatccctcaatatttagga
ttagcttag
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