Quillaja saponaria (soapbark tree): O6P43_010884
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Entry
O6P43_010884 CDS
T09778
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
O6P43_010884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsa03041
]
O6P43_010884
03009 Ribosome biogenesis [BR:
qsa03009
]
O6P43_010884
Enzymes [BR:
qsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
O6P43_010884
Spliceosome [BR:
qsa03041
]
Complex A
U2 snRNP components
U2 related factors
O6P43_010884
Complex B
O6P43_010884
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
O6P43_010884
Ribosome biogenesis [BR:
qsa03009
]
Eukaryotic type
90S particles
Helicases
O6P43_010884
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
ResIII
FtsK_SpoIIIE
SRP54
T2SSE
ABC_tran
AAA_7
AAA_16
AAA_30
TsaE
PhoH
Motif
Other DBs
NCBI-ProteinID:
KAJ7973095
LinkDB
All DBs
Position
4
Genome browser
AA seq
727 aa
AA seq
DB search
MGTERKRKVSLFDVVDDASAKMAKFNGGIANINNNVGNSLINSWNGRPYSQRYYEILEQR
KHLPVWHQKEEFLQALKANQALILVGETGSGKTTQIPQFVLEAVDIETPNKCKKMLIACT
QPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLL
ERYKVIVLDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQGYFSGAPLLK
VPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKISKE
IANMGDQVGPVKAVPLYSTLPPTMQQKIFESAPPPVKEGGPPGRKIVVSTNIAETSLTID
GIVYVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFQ
NDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDD
DGNLTKLGEIMSEFPLDPQMSKMLVVSPKFNCSNEILSISAMLSVPNCFVRPREAQKAAD
EAKSRFGHIDGDHLTLLNVYHAYKQNNEDPSWCFENFINHRGLKSADNVRQQLVRIMARF
NLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKP
EWVIYNEYVLTSRNFIRTVTDIRGEWIVDVAPHYYELANFPVCEAKRVLEKLYKKREKER
EESRNRK
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgggtactgaaagaaagaggaaagtgagcttattcgatgttgtagacgatgcttcggcg
aagatggccaaattcaatggtgggattgccaatatcaacaacaacgttggtaatagtttg
atcaatagctggaatggaaggccgtactcacagaggtattacgagatattggagcagagg
aaacatttacctgtttggcaccagaaggaggagttcttgcaggctttgaaggccaaccag
gctttgatcttggttggtgagactggtagtggaaaaactacccagatccctcaatttgtt
ttagaagctgttgatatagagactccaaataaatgcaagaagatgttgatcgcatgcact
caacctcgtagagtggctgctatgtctgtttcccgacgtgttgccgaagagatggatgta
actatcggagaagaagttggttatagcatcagatttgaagactgcagcagtgcaaggaca
gttctgaagtatctaacagatggtatgcttttaagagaagcaatgacagatccacttttg
gaacgatacaaagtaattgtacttgatgaggctcatgaaagaactctggcaacagatgtg
ctttttgggcttctaaaggaagtgcttagaaatagacctgacttgaagctggttgttatg
agtgcaactcttgaggctgaaaagtttcaaggctatttcagtggtgcgcctcttttgaaa
gttcctggaaggcttcaccctgtggagattttctatacccaggaacctgaaagggattac
ctggaggcagcgattcggacagttgtgcagatacacatgtgtgaacctcctggggatata
cttgtttttcttactggagaagaggagatagaagatgcttgtcgcaaaatatcaaaagaa
attgccaacatgggggaccaggtgggcccagtgaaagctgtacctctgtactcaactctt
cccccaaccatgcagcagaagatatttgaatctgctccacctcctgttaaagagggtggc
cctcctggaaggaagattgttgtatcaacaaacattgcagaaacttctttgactattgat
ggtatagtctatgttattgaccctgggttttccaagcaaaaggtttataacccacgaatt
cgtgttgagtcattgttggtatctccaatatcaaaggcaagtgcacaccagaggtcagga
cgtgctggaagaactcagccgggcaaatgttttagactttacactgagaaaagtttccaa
aatgatcttcagcctcagacttatcctgaaattttgagatcaaatctggcgaatacagtt
cttaccttgaagaagctggggatagatgatttggtgcattttgatttcatggatcctcct
gctccagagaccttgatgcgggcattggaagtgttgaattatttgggtgcattggatgat
gatggtaacttaacaaagctgggtgaaattatgagtgaatttcccttggatcctcagatg
tcaaagatgctcgttgttagtcctaaattcaactgttcaaatgagattctgtcaatctct
gccatgctttcagtacccaattgctttgtccggcctagggaggctcaaaaagctgcagat
gaggcaaaatctagatttgggcacattgatggagatcacctcacacttttgaatgtttac
catgcttacaagcaaaacaatgaggatccatcttggtgctttgaaaatttcattaatcat
agggggctgaaatctgctgataatgttagacaacagctagtgcggatcatggcccggttt
aacctgaagttgtgcagcaccgacttcaacagccgtgactactatgttaacataagaaag
gctatgctagctggatactttatgcaggttgctcacctggagcgcactggccactacctg
acagtgaaagacaaccaggtggtgcacttgcatccatctaattgcctggatcacaagcct
gaatgggtcatttacaatgaatatgttctaaccagtcggaatttcatacgtacagtgaca
gatattcgtggtgaatggatagttgatgtagcaccacactattacgaattggcaaatttc
cctgtgtgtgaggcaaagcgtgttcttgaaaagctctacaagaagagggagaaggagagg
gaggaaagccggaaccggaaatag
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