Quillaja saponaria (soapbark tree): O6P43_012203
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Entry
O6P43_012203 CDS
T09778
Name
(GenBank) Cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
O6P43_012203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsa03021
]
O6P43_012203
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_012203
Transcription machinery [BR:
qsa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
O6P43_012203
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
O6P43_012203
U7-dependent histone pre-mRNA processing factors
O6P43_012203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-ProteinID:
KAJ7968040
UniProt:
A0AAD7PV65
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All DBs
Position
5:complement(4803486..4807934)
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AA seq
660 aa
AA seq
DB search
MASTGQPTSLKRRDSSINREEDRLIVKPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYS
GMAALPYFDEIDPSTVDVLLITHFHLDHAASLPYFLEKTPFKGRVFMTYATKAIYKLLLS
DYVKVSKVSVEDMLFDEHDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVD
IAGVRVLYTGDYSREEDRHLRAAEMPEFSPDVCIIESTYGVQLHQPRNTLEKRFTDVIHS
TISQGGRVLIPSFALGRAQELLLILDEYWANHPELHNIPIYYASPLAKKCLNVYETYTLS
MNDRVQNAKSNPFSFKYISALSSIDVFKDVGPSVVMASPFGLQSGLSRQLFDKWCSAKKN
ACIIPGYVVEGTLAKTIINEPKDVTLMNGLAAPLNMQIHYISFSAHADSSQTRAFLEELN
PPNIILVHGEANAMGRLKQMLVSQFSDRSTKIFTPKNCQSVEMYFHSQKMAKTIGRLAEK
SPEVGETVSGLLVKKGFTYQIMASDDLHVFSQLSTANITQRITIPYSVHERVTMKQHSEK
HISLHWTSDPISDLVSDSIVALVLSINREVPKVIVESEAIKAEEENEKKAEKVIHALLVS
LFGNVTVGENGKLVISVDGNVAELDKQNGDVESENEGLKEKVRTAFKRVQSAVKPFPLSS
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaactggacagccaacctctctcaagagacgtgactcatccataaatagagaa
gaagatcgacttattgtaaagccattgggagctggaaatgaagtgggtcggtcttgcgtt
tacatgtcctacagaggcaaaacaatattgtttgattgtggaatacatccagcttactca
ggtatggctgctttgccatacttcgatgagattgatccttcaacagttgatgttcttctc
attacccattttcacttggatcatgctgcatcattaccttattttctggagaagactcca
ttcaaaggccgagtgtttatgacctatgcaacgaaggctatctataagctgcttttatca
gattatgtaaaagtgagcaaggtttccgttgaagatatgttgtttgatgaacacgacatc
aatcgctccatggataaaattgaggtcattgattttcatcaaacagtagaagtgaatggt
attagattctggtgttatactgcaggccatgttcttggtgctgctatgtttatggttgac
attgcaggtgtccgggtcctctacactggtgattattcacgtgaagaagaccggcatctc
cgtgctgctgagatgcctgagttctcccctgatgtatgcattatagaatccacttatggt
gtccagctccatcagccccggaacaccctagagaagcgcttcactgatgttatccactca
acaatttctcaagggggtcgagtcctaattccatcatttgcccttggtcgtgcccaagag
ctactcctgattcttgacgaatattgggcaaaccatcctgaactccataatatacctatc
tattatgcttctcctcttgctaaaaaatgtttaaatgtttatgagacctacaccctttcc
atgaatgatagggtccagaatgcaaagtcaaatccattctccttcaagtacatatcagcc
ttgagtagcattgatgttttcaaagatgtaggaccatctgtagttatggccagccctttt
ggactccagagtgggttgtcacggcaattatttgataagtggtgctctgctaagaaaaat
gcttgtattattcctggatatgtggttgaagggacgctggcaaaaaccatcattaatgaa
ccaaaggatgtcaccctcatgaatggacttgctgcacctcttaacatgcagatccactac
atctccttttctgcccatgcagactcttctcaaacaagagccttcttggaagaactaaat
cctcccaacataattcttgttcatggggaagctaatgcgatggggaggctaaaacagatg
cttgtaagtcagttttctgatcgtagcacaaagatcttcacccctaagaattgtcagtct
gttgaaatgtattttcactcacagaaaatggcaaaaaccattgggaggttggctgaaaaa
tcccctgaagttggtgaaacagttagtggtttgctcgtaaagaaaggttttacatatcag
ataatggcttctgatgatctccatgtcttctcacagctatcaactgcaaacatcactcag
agaattactatcccatattcagtccatgaacgggtgacaatgaagcagcactctgagaag
cacatctcattgcattggacatcagatcccataagtgacttggtatcagactctattgtg
gcactggttttaagtatcaaccgggaagtccccaaagtaattgttgagtcagaggccata
aaagctgaggaagagaatgagaagaaggcagaaaaggttattcatgcactccttgtttca
cttttcgggaacgtgacggttggagaaaatgggaagctggtaattagtgttgatggaaat
gttgcagagcttgacaaacagaatggggatgttgagagtgaaaatgaaggccttaaggaa
aaagtaagaacagcatttaagcgtgttcaaagtgctgttaaaccatttcctctttcttct
taa
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