Quillaja saponaria (soapbark tree): O6P43_013099
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Entry
O6P43_013099 CDS
T09778
Name
(GenBank) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
O6P43_013099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsa03021
]
O6P43_013099
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_013099
Transcription machinery [BR:
qsa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
O6P43_013099
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
O6P43_013099
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
Motif
Other DBs
NCBI-ProteinID:
KAJ7969091
UniProt:
A0AAD7M4X5
LinkDB
All DBs
Position
5:12172449..12181534
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AA seq
484 aa
AA seq
DB search
MLQTNFFNIGVLVFLNKLKNLSFHKVITPVNQGVVGKPLTAESANVQPQQVQQSQQQFSQ
TQMQNLPMASLIRQTELLLPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNE
AFDSAENVILIFSVNRTRHFQGCAKMTSRIGGSVSGGNWKYAHGTAHYGRNFSVKWLKLC
ELSFHKTRHLRNPYNENLPVKISRDCQELEPAIGEQLASLLYLEPDSELMAISIAAESKR
EEEKAKGVNPDNGGENPDIVPFEDNEEEEEEEESEEEEEESFVQGLGAATQGRGRGRGMM
WPPHMPLGRGARPLSGMQGFLVILQAPPAMMFHGRPSQPGVFPRGGFGMMMNPARAPFMG
GVGNPARASRPVGMSPMFPPPPPSSLQNINRVVKRDQRTPGNDRYSAGSEQGKGQDFVSP
GRGPDDNAQYQQGYKARQEDQYANVNNFRNDESESEDEAPRRSRHGEGKKKRRSPEDVMT
GSNH
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaaacaaattttttcaacatcggggtgctggttttcctcaacaagttgaaaaat
ctcagtttccacaaggttataactccagtcaatcaaggtgtagttggaaaaccgttaaca
gcagagtctgccaatgttcagccgcagcaagttcaacagtcccaacagcagtttagccag
acccagatgcaaaatcttccaatggccagcctaatcaggcaaacagaactgctgctgcct
ttgcctcaaggaatatctaggtattttattgttaaaagttgcaatcgtgaaaatttggaa
ttatctgtacaacaaggagtatgggctacccaaaggagcaatgaagctaaactgaatgaa
gcttttgactctgctgaaaatgtaatattgattttctcggtcaacaggactcgtcatttc
cagggttgtgcaaagatgacatccagaattggtgggtctgttagcgggggaaattggaaa
tatgcacatggaactgctcattacgggcggaacttttcagtcaaatggctaaagttatgt
gagctctccttccacaaaacacgccatttaaggaatccatacaatgagaatttaccagta
aagataagtagagattgtcaggaattggagcccgctattggtgagcagttggcttcatta
ctttatcttgagccagatagtgaacttatggcaatatcgattgcagcggagtcgaaacga
gaagaggaaaaagcaaagggagtcaatccagataatggaggagaaaatcctgacattgtc
ccatttgaggacaatgaagaagaagaagaagaggaagaaagtgaagaggaggaggaggag
agctttgtccagggtctaggagcagctactcaaggcagaggtaggggtagaggtatgatg
tggccccctcatatgccactaggacgcggggccagacctctctctggaatgcaaggtttt
ctggtgattttacaggcccctccagccatgatgtttcacgggcggccttcacaacctggg
gtatttccacggggtgggtttgggatgatgatgaatcctgcacgtgctccttttatggga
ggggtggggaaccctgctcgagccagcagaccagttggtatgtctccgatgtttccacca
cccccaccatcatccttgcagaacatcaaccgggttgtaaagagagatcaaaggacacca
ggtaatgatcggtatagtgctggatcagaacagggcaagggtcaagactttgtgagtcca
gggcgtgggcctgatgataacgcacagtaccagcaagggtacaaggctcgccaagaagat
cagtatgctaatgtgaataactttagaaatgatgagagtgaaagtgaagatgaggcacct
aggcggtcaaggcatggagaggggaagaagaaaaggcgaagcccagaagatgttatgaca
ggctctaatcattag
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