Quillaja saponaria (soapbark tree): O6P43_013331
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Entry
O6P43_013331 CDS
T09778
Name
(GenBank) Cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
O6P43_013331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_013331
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
O6P43_013331
U7-dependent histone pre-mRNA processing factors
O6P43_013331
SSDB
Ortholog
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GFIT
Motif
Pfam:
Lactamase_B_6
Beta-Casp
CPSF100_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
KAJ7969356
UniProt:
A0AAD7PV49
LinkDB
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Position
5:complement(19435543..19444235)
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AA seq
744 aa
AA seq
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MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSRVASTVDAVLL
SHSDTLHLGALPYAMKQFGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDID
SAFQSITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKE
RHLNGIVRGSFVRPAVLITDAFNALNNQTYKRHQDKEFGDIIKETLRAGGNVLLPVDTAG
RVLELLLIMESYWADESLSYPIFFLTYVASSTIDYVKSFLEWMSDSITKSFELTRENAFL
LKHVTLLVNKTELDKAADGPKVVLASMASLEAGFSHDIFVEWAADPKNRVLFTERGQFGT
LARMLQADPPPKAVKVTMSKRVPLVGEELIAYEEEQNRIKKEEALKASLIKEEELKASHG
NENNMSDPMVIDASNSHASPEDKMTMAGPRGGGFRDILIDGFVPPSSSVAPMFPFYENTS
EWDDFGEIINPDDYVIKDEDMDHAAMHVGGDMDGNFDEGSASLILDTKPSKVVSNELTVQ
VRCSLKYMDFEGRSDGRSIKSILSQIAPLKLVLVHGSAEATEHLKHHCLNSVCPHVYAPQ
IEETTDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTDGGMLSLLPLPTSA
PPHKSVLVGDLKLPDFKQFLSSKGIQVEFSGKALRCGEYVTIRKVGDASQKGGGSGTQQI
VIEGPLCEDYYRIREFLYSQFNLL
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgggaacatcggtgcaggtgacaccactgtgtggagtgtacaacgagaacccattgtca
tatttggtctcaattgatggattcaacttcctcatcgactgtggctggaacgaccacttc
gacccttctcttcttcaacccctctccagggttgcatcaactgtagatgcagtcttgctt
tcacattcggatacacttcaccttggtgctctcccatatgccatgaaacagtttggactc
tctgctccagtttattcaacagagcccgtatatagattaggcctcctcaccatgtatgat
caatatctctcaaggaagcaagtgtcggagtttgatctgtttacgctggatgatattgat
tctgctttccaaagtataaccagactgacctactctcagaatcatcatctctcaggcaag
ggagagggaattgtgattgcacctcatgttgctggacatctgttgggaggtacagtatgg
aagataacaaaggatggtgaggatgtcatatatgctgttgacttcaaccatcgcaaggaa
aggcatttgaatggaattgttcgaggatcctttgtccggcctgctgttctaataacagat
gcattcaatgctttgaacaatcagacttataaacgccatcaggataaagaatttggagat
atcataaaggagactcttagagcaggtggaaatgtgttactacctgttgacactgctggg
agagtattggaacttcttttgataatggaatcgtattgggctgatgaaagtttgagctac
cccattttctttctgacatatgtagcatctagcacaattgattatgttaaaagtttcctc
gaatggatgagtgactccataacaaagtccttcgaactaactcgtgaaaatgcgtttctt
ttgaagcatgttactcttctagtgaacaagactgaacttgataaagctgcagatggtcca
aaggttgttttagcatctatggcaagtttggaagcgggtttctctcatgatatatttgtc
gaatgggcggcggatcccaaaaatcgtgtgcttttcacagaaagaggccagtttggcaca
ctagctcgtatgcttcaggctgatccaccaccaaaagctgtcaaagtcactatgtccaag
agggttcctttggttggggaagaactaattgcttatgaagaagagcagaatcgaataaag
aaggaagaagctctgaaagctagtcttattaaagaggaagaattgaaagcatctcatggg
aatgagaataatatgagtgatcccatggtcattgatgcaagcaatagtcatgcttctcca
gaagataagatgacaatggctggtccacgtggtggtgggttccgggacatattaattgat
ggatttgttcctccatcttctagtgttgcaccaatgtttcccttctatgagaatacatca
gagtgggatgattttggtgaaatcataaatccagatgattatgtaattaaggatgaagac
atggaccatgctgcaatgcatgttggtggtgatatggatggaaattttgatgaaggctct
gcaagtttgatacttgatacaaagccatcaaaagttgtatctaatgaattgacggtgcaa
gtcaggtgttcacttaagtacatggactttgagggccgctctgatgggcgatctattaaa
tcaattctatcacaaatagctcccttaaagcttgttttggtgcatggatcagctgaagcc
acggagcatttgaagcaccactgcctgaacagtgtttgccctcacgtttatgctccccaa
attgaagaaacaaccgatgtcacctctgatttgtgtgcttataaggtacaactatctgag
aagctaatgagcaatgtgctctttaagaagctgggagattatgaaatagcttgggttgat
gctgaagtagggaagacagatggtggcatgctgtcattgcttccccttccaacatcagct
cctccacataaatctgttcttgttggtgatttaaaattacctgattttaagcagtttctc
tccagcaagggtattcaggtagaattttctggtaaggctttgcgctgtggtgaatatgta
actatacgcaaggttggagatgctagtcagaagggcggtggctctggtactcagcaaatt
gtcattgaaggccctttgtgtgaggattattatagaattcgtgaatttctatactcacaa
tttaatttgctctaa
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