Quillaja saponaria (soapbark tree): O6P43_013449
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Entry
O6P43_013449 CDS
T09778
Name
(GenBank) BSD transcription factor
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03022
Basal transcription factors
qsa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
O6P43_013449
09124 Replication and repair
03420 Nucleotide excision repair
O6P43_013449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsa03021
]
O6P43_013449
03400 DNA repair and recombination proteins [BR:
qsa03400
]
O6P43_013449
Transcription machinery [BR:
qsa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
O6P43_013449
DNA repair and recombination proteins [BR:
qsa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
O6P43_013449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-ProteinID:
KAJ7963500
UniProt:
A0AAD7LSG9
LinkDB
All DBs
Position
6
Genome browser
AA seq
583 aa
AA seq
DB search
MSTGQVIKRAKYKTSVKDPGTPGVLKMTENKIVFRPNDPSSGTKLDMEFRFIEKHKITKE
GSNKPPWLNLTNSQGQSYIFEFESFPDLHVCREFVGNALAKSEDAPKVVSDEQLSTADLQ
RRIKLLQEDSELQKLHKQFVIGGVLTESEFWATRKKLLDIDVSRKSKQLVGFNNSMILDT
KPTSDGRTNKVTFNLTPEIKYQIFALKPAVRQAFLKFVPSKMTEKDFWTKYFRAEYLHST
KNAVAAAAEAAEDEELAVFLKDDEILESEARRKIRRVDPTLDMEADQGDDYTHLPDHGIF
RDGSKEISEPQHELYRRTLSQDLNRQGAVVLEGRTVDVELEDPRTVAEALARTRNESIGN
TEQGRLDRISQMTQIEDLQTPQDHPFAPLCIKDPRDYFDSQQANAVKTLNDSQAKFDRCR
LSPEEAYGSLRKSIYKIKTVGLSDPIVSPEVALMVLNGLTQNISSTKSLGKNSQESVLDR
LPFATKEELLHHWVSSQELLRHFWSSYPITTPYLYNKVSKLKDAMSLLYSKLEEIKAARS
DLRHQVSLIVHPMQQAIEAALSHYDTDMRKRAARGAEKPNGYV
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacggggcaagtcattaagcgtgccaaatacaagacttctgtcaaggaccctggc
actcctggtgtgctaaaaatgactgaaaataagattgtatttaggcctaatgatcctagc
tcgggtacaaagctggatatggagttcagatttattgaaaagcacaaaatcacaaaggag
ggatcaaacaaaccaccatggctcaatcttaccaacagtcagggtcaaagctatatcttt
gagtttgaaagctttccagatcttcatgtgtgtcgagaatttgtgggcaatgctcttgca
aagtctgaagatgctccaaaagttgtttctgatgaacagctgagtacagctgatttgcag
cgcaggattaagctattgcaagaggatagtgagttgcagaaacttcataagcaatttgtt
attggcggtgtcttgactgaatctgagttttgggctacgaggaagaagttgctggatatt
gatgttagcagaaagtcaaaacaactagttggtttcaacaattcaatgattttagacacc
aaaccgacaagtgatggtcggacaaacaaagtcacatttaatttgacacctgagatcaaa
tatcagatttttgctctgaaaccagccgttcgccaggcattccttaaatttgtacccagc
aagatgaccgagaaagacttctggactaaatattttagagcagaatacctccatagtaca
aaaaatgctgttgcagcagctgcagaggctgctgaagatgaggagcttgctgtatttctg
aaagatgatgagatattggaaagtgaagctcgacggaagattcgacgagttgacccaact
ttagacatggaagctgaccaaggagatgattacacacatcttcctgatcacgggattttt
cgtgatggtagcaaggagatatctgaaccacagcacgagctgtatcggagaactctgtcg
caagaccttaacagacagggtgcagttgttcttgaaggaagaactgtagatgtggagctg
gaagatccaagaactgttgcagaagcacttgcacggacaagaaatgaatccatagggaac
acagagcagggaagacttgataggatttctcagatgacccagattgaggatcttcagaca
cctcaagatcatccttttgctccactttgtatcaaggatcctcgtgactactttgattcg
caacaagcaaatgcagttaagactttgaatgattcacaagctaaatttgatagatgcagg
ctgagtcctgaggaagcatatggctctttgagaaagtccatatataagattaaaaccgtg
ggactgagtgatcccatagtcagtcccgaggttgctcttatggtccttaatgggttgacg
caaaatatctcaagcaccaagtctttagggaaaaattctcaggaaagtgttctggacaga
ttgccatttgcaactaaagaggagctcctacatcattgggtttccagtcaagaattactg
aggcatttctggtcttcatatccaattactacaccatatctttataacaaggtgagcaaa
ctgaaggatgccatgtcactattatattcgaaactagaggaaataaaggctgcacggtca
gacctgcggcatcaagtttcccttattgttcatcctatgcagcaggcaatagaagctgct
ttatcacattatgacactgacatgcggaagagagcagcaagaggtgcagagaagccaaat
ggatatgtctag
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