Quillaja saponaria (soapbark tree): O6P43_015077
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Entry
O6P43_015077 CDS
T09778
Name
(GenBank) Transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
O6P43_015077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsa03021
]
O6P43_015077
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_015077
Transcription machinery [BR:
qsa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
O6P43_015077
RNA polymerase I system
O6P43_015077
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
O6P43_015077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW6_SPT51-2
KOW2_Spt5
KOW
KOW4_SPT5
KOW7_SPT5
KOW5_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
ProQ_C
DUF4438
Motif
Other DBs
NCBI-ProteinID:
KAJ7965435
UniProt:
A0AAD7LW81
LinkDB
All DBs
Position
6
Genome browser
AA seq
1043 aa
AA seq
DB search
MPRRDLDDEEEEEYEDDRDQVLDDEEEEEEEEEEDRGASSRKRRRSDFIDEYADEDEDEE
EEDDEDDEDFGGGGGGGGGKKQRPKRRSGSHFFDEEAAVDSDADEDEEEGEDDFIVDNGT
DLPDDDVGRRVHRRPLLPQEDQEDLEAIGRRLQERYARSNHMEYDEETTDVEQQALLPSV
RDPKLWMVKCAIGREREVAVCLMQKYIDKGPELQIRSVVALDHLKNYIYVEADKEAHVRE
ACKGMRNIYAQKITLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNV
RLRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRYMNVEEAREMHIRVERRRDPMTG
DYFENIGGMLFKDGFLYKTVSMKSISSQNIKPTFDELEKFRKPGENGEADLASLSTLFTN
RKKGHFLKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEIKGLPKTLAVNAKELCKYFEP
GNHVKVVSGAQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEITSGVTRIGDY
ELHDLVLLDNLSFGVIIRVETEAFQVLKGVPDRPEVALVKLREIKCKLEKKISVQDRFKN
TLSAKDVVRILEGPCKGKQGPVEHVYRGVLFIYDRHHLEHAGFICAKAQSCVVVGGSRSN
GERNGDAYSRFSSLKAPPRIPQSPKRFSRGGPPIDSGGRHRGGRGHDGLVGATVKIRLGP
YKGYRGRVVEVKGTSVRVELESQMKVVTVDRNHISDNVAVSTPYRDTTRYGMGSETPMHP
SRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQY
QPGSPPSRAYEAPTPGSGWAGTPGGNYSDAGTPRDSSSAYANAPSPYLPSTPGGQPMTPN
SASYLPGTPGGQPMTPGTGGLDVMSPVIGGDNEGPWFMADILVNLRRPGEDSIVGVVREV
LPDGSSRVALGSTGNGDTVTALPNEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGI
VKVDDTLDVKILDLVILAKLAQS
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgccgagacctcgatgatgaggaggaagaggagtacgaagacgatcgagaccaa
gttctcgatgacgaagaagaggaagaggaggaggaagaagaagacagaggagcttcgagc
cggaagcggaggagatctgattttatagatgagtatgccgatgaggatgaggatgaagag
gaagaagatgacgaggatgatgaagattttggtggtggaggtggtggtggtggtggtaaa
aaacaacggccgaagaggcgttctgggtctcacttcttcgacgaggaagcagcggtggat
agcgatgcagatgaggatgaagaagaaggggaggacgacttcattgttgacaatggaact
gatctaccggatgatgatgttggtagacgggttcatcgccgccctttgctgccacaagaa
gatcaagaagatcttgaagctatagggagaagacttcaggaaagatatgcaaggagtaac
cacatggaatatgatgaggagactacagatgtagaacagcaagcccttttgccatctgtt
agagatccaaaattgtggatggtgaaatgtgcgattggtcgtgagcgggaggtggctgtt
tgcctcatgcaaaagtacattgataaagggcctgaattgcaaatcaggtctgttgttgct
cttgatcatctcaagaattatatatatgttgaagcagataaagaagcacatgtgagggag
gcctgcaaaggaatgcgcaacatatatgcccaaaaaataactctggtaccgattagagaa
atgactgatgttctctctgttgaaagcaaagctattgatctttctagagatacttgggtc
agaatgaagattgggacatataaaggggaccttgccaaagtagtggatgtggacaatgtg
cgtctgagagttacagtgaaattaattccaaggatagacttgcaggctcttgcaaacaaa
ttggaaggtagagaagttgtgaaaaagaaggcatttgttcctcctccacgttatatgaat
gttgaagaagctagagaaatgcatatccgtgtagagcgtagacgagatccgatgactggg
gattacttcgaaaatattgggggcatgctgtttaaagatggtttcttatacaaaacagta
tcaatgaaatccataagctcgcagaacataaaaccaacttttgatgaacttgaaaagttt
cgtaaaccgggtgagaatggagaagctgacttagctagtctgtcaactttgtttacaaat
agaaagaaagggcactttttgaagggtgatgccgtaattgtcatcaagggggaccttaag
aacttgaaggggtgggtggagaaagttgatgaagagaatgttcatataagaccggaaatt
aagggtctcccaaaaactcttgctgtaaatgcgaaagaactttgcaagtactttgaacct
gggaatcatgttaaggttgtttctggcgctcaagaaggtgccactggtatggttgtcaag
gtggagcagcatgtcctaatcatactatctgatacaacaaaagaacatatccgtgtattt
gctgatgatgttgtcgagagttctgaaataacttctggtgttaccagaattggggactat
gagcttcatgatcttgtcctgttggataatttgagctttggtgtgataatacgtgtcgaa
actgaagcatttcaggttcttaagggggttcccgacagacctgaggttgcccttgttaaa
ttaagagaaatcaagtgcaagttggagaagaaaattagcgtgcaagatcggtttaagaat
acattgtctgctaaagatgttgttcgaattcttgagggtccttgtaaagggaaacaaggt
cctgtggagcacgtatacagaggagtcttgtttatatatgatcgccatcacctagagcat
gctggatttatatgtgccaaagcccaatcatgcgttgttgtgggtggctcacgctccaat
ggtgaaagaaatggtgatgcatactcaagattctcgagtcttaaagctccacctcgtatt
ccacaatctcccaagaggttttcacgaggagggcctccaattgactctggaggaaggcat
aggggtggaagagggcatgatggtttggttggtgcaacagttaaaatacgtctgggtccc
tataagggttaccgaggccgtgtcgtagaagtcaaaggaacatcagttcgagttgaattg
gagtcccaaatgaaggttgttacagttgatcgcaatcatatatctgacaatgtcgctgtt
tcaactccatatcgggacacaactcgatatggaatgggaagtgagacgcctatgcatcct
tctcgaactccactacacccatatatgactcctatgcgagatgctggagcgacacctatt
catgatggaatgaggacacctatgcgtgatcgagcatggaatccttatacaccaatgagc
cctccaagggataattgggaagatggaaacccaggctcttggggaaccagccctcagtat
cagccaggaagtcctccttcacgggcctatgaagcaccaacccctggttctggttgggct
ggcactcctggtggcaattacagtgatgctggaacaccccgggatagtagttctgcctat
gctaatgctccgagcccatacttgccatcaactcctggtggacagcctatgacaccaaat
tcagcatcctatcttcctggtacccctggagggcagcccatgactccaggaactggtggt
ctggatgtcatgtccccagttataggtggggacaatgaagggccatggtttatggcggat
atattggtcaatctgcgcaggcctggagaggattctattgtgggagttgtaagagaggtg
cttccggatggctctagtagggtagctcttggttcaactggcaacggtgacactgtgaca
gctcttcccaatgaaatggaggctgtcgtaccgaggaaatcagacaaaataaagatcatg
ggtggggcattacgtggtgccactggcaaattgattggtgttgatggtacagatggaatt
gtaaaggtagatgatacattagatgtcaagattttagacttggtcattttggcaaaatta
gcccaatcttga
DBGET
integrated database retrieval system
