Quillaja saponaria (soapbark tree): O6P43_016537
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Entry
O6P43_016537 CDS
T09778
Name
(GenBank) Exosome complex exonuclease RRP40
KO
K03681
exosome complex component RRP40
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O6P43_016537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_016537
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
O6P43_016537
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Paralog
GFIT
Motif
Pfam:
RRP40_S1
KH_6
Rrp40_N
RRP40_N_mamm
S1_RRP4
Motif
Other DBs
NCBI-ProteinID:
KAJ7961158
UniProt:
A0AAD7LN64
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All DBs
Position
7:918981..926073
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AA seq
236 aa
AA seq
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MENKPTSFVDRIVVPGDVVLDLSTMTNQTIKLGGGLRQDGDAISVMKAGKLRFSKPNKYW
VEGSQKRYVPHAEDSVLGIVVDTKPDNFLVDIKGPALAVLPVLAFEGGTRRNIPKFEAGT
LLYVRVVKANPGMNPELSCTDASGKAAEYGPLKDGYMFECSTGLSRMLLSSPTCPVLDAL
GKKLSFEIAVGLNGRVWVNGASPSTIIIVANAIMNSESLSGVQQRIMAEKLLQRIQ
NT seq
711 nt
NT seq
+upstream
nt +downstream
nt
atggagaataagcccacaagctttgtggaccggatagttgttccaggagatgtggtcctt
gatctctcgaccatgactaaccagacaattaagctgggaggtggtctacgtcaggatggt
gatgcaatttcagtaatgaaggctggcaagctaaggttctcaaaaccaaacaaatattgg
gttgaaggttcccagaaaaggtatgtgccccatgcagaagattctgttcttggaatcgta
gtagacaccaaaccagataactttcttgttgacataaaagggcctgctttggcagttttg
cctgtgcttgcatttgaaggaggaaccaggagaaatataccaaagtttgaggcaggcact
ttgctttatgttcgggttgtgaaggcaaaccctggaatgaatcctgagctatcatgcact
gatgcgagtgggaaagcagcagaatacggtcccctaaaagatggctacatgtttgaatgt
tcgactggtctatcgagaatgttgctcagctctccaacatgtcccgttctcgatgctcta
gggaagaagctgtcctttgagatagcagttggcttaaatgggcgtgtttgggtcaatggg
gcatctccatctacaataatcatcgttgctaatgcaatcatgaactcagagtcattgagt
ggggttcagcagagaataatggccgagaagttgcttcagagaattcagtaa
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