Quillaja saponaria (soapbark tree): O6P43_017765
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Entry
O6P43_017765 CDS
T09778
Name
(GenBank) RNA polymerase II transcription factor B subunit 2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03022
Basal transcription factors
qsa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
O6P43_017765
09124 Replication and repair
03420 Nucleotide excision repair
O6P43_017765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsa03021
]
O6P43_017765
03400 DNA repair and recombination proteins [BR:
qsa03400
]
O6P43_017765
Transcription machinery [BR:
qsa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
O6P43_017765
DNA repair and recombination proteins [BR:
qsa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
O6P43_017765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
MetRS-N
Motif
Other DBs
NCBI-ProteinID:
KAJ7962559
UniProt:
A0AAD7LQM5
LinkDB
All DBs
Position
7
Genome browser
AA seq
450 aa
AA seq
DB search
MPQVKIIAKNFMDMVSSLPAMKLDKLYENAFICEAILRSLQPLAKKYVLQMLYIDTLVAA
KLMEEWVLPDWFSKHRVALDRLLQLRIFTETVDRKKEKMYRINSTFQKNLQKLLVHGEVL
PREPMPPNTVRLPSLEDLEAYALAQWEFFLLQLISSNQAERSSSISSAMLKVFKRGLLSQ
RDKEAPKLTESGFQFLLMDTNAQLWYIIREYISNSEERGVDSADLISFLLELSFHVTGEA
YNLNTLNDVQRITIKDLADLGLVKLQQGRKESWFIPTKLVTNLSASLTDSSSRKQGFVVV
ETNFRMYAYSTSKLLCEILQQFASLEYQLPNLIVSAITKDSIYNAFEKGITADQIISFLQ
QNAHPRVALRIPSVPENVTDQIRLWESDRNRVEITPAHYYDEFPSREVFEAACDCAREWN
GLLWEDSKKMRMVVKAEAHMHVREYLRRQK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaggttaagattatagccaagaatttcatggacatggtgtcctccttgcctgcg
atgaagctcgacaaactctacgagaatgcattcatctgtgaagcgattctcaggtctctg
caacctttagccaagaaatatgttcttcagatgctatatattgatactctggtggcagcc
aaattgatggaggagtgggtgcttccagattggttctcaaagcatagagttgctcttgat
agattgcttcagttgagaatttttaccgaaactgttgacaggaaaaaagagaaaatgtac
agaatcaactcaacatttcagaaaaatctccagaagcttctggtacatggtgaagttttg
ccaagggaacctatgcctcctaatactgtgaggctcccaagcttagaggatcttgaggct
tatgccctagcacaatgggagtttttcttgttgcaactaataagctcgaatcaagctgaa
aggtcatctagcatcagctctgctatgctgaaagttttcaagcgagggcttctgagtcaa
agggataaagaagctccaaagttgactgagagtggcttccagtttttgttgatggacaca
aatgctcaactttggtacatcattagagaatacatctccaactccgaggaacgaggtgtg
gattctgctgacttaatttcgttcttgcttgagcttagttttcatgtaacaggggaggca
tataatttaaacacattgaatgatgtccagaggattacaatcaaagaccttgcagacttg
ggcttggtcaaacttcagcagggaaggaaagagagttggtttatacccactaaattggtt
actaacctttcagcaagcttgactgattcgtcatcacggaagcagggttttgtggttgtg
gaaacaaattttaggatgtatgcctactcaacttcaaaattactctgtgaaatattacaa
caatttgccagcctggagtatcaacttccaaatcttattgtttcagcaataacaaaagac
agtatctacaatgcttttgaaaaaggcattactgctgaccagataatcagtttccttcag
cagaatgcacatcctcgtgttgctcttagaattccatcagtacctgaaaatgtcacagac
cagattaggctttgggaatcagatcgaaatagggttgagattactcctgcacattattat
gatgagtttccttctagggaggtattcgaggctgcttgtgactgtgcccgagaatggaat
ggtttgctttgggaagattcaaagaaaatgcgcatggtagtcaaggcagaagcacacatg
cacgtgcgagaatatttacgccgtcagaagtag
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