Quillaja saponaria (soapbark tree): O6P43_018013
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Entry
O6P43_018013 CDS
T09778
Name
(GenBank) Pre-mRNA-processing-splicing factor
KO
K12856
pre-mRNA-processing factor 8
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
O6P43_018013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsa03041
]
O6P43_018013
Spliceosome [BR:
qsa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
O6P43_018013
Complex C
U5 SnRNP specific factors
O6P43_018013
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-ProteinID:
KAJ7962843
UniProt:
A0AAD7LRF3
LinkDB
All DBs
Position
7:22833846..22845603
Genome browser
AA seq
2318 aa
AA seq
DB search
MWNNNQIAPPGTGGSSILPPPAAQPSYTVLPSPAEAEAMLEEKARKWQQLNSKRYSDKRK
FGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPW
EQVRDVKVLYHISGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFD
DEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHLS
LPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDE
DWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMIMYIKTEDPDLPAFY
YDPLIHPITSTNKERRDKKAYDDEDDDDFYLPEGVEPLLKDTQLYTDTTAAGISLLFAPR
PFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKK
KHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKT
LTTKERKKSRFGNAFHLCREILRLTKLLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGP
VGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESH
FDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMIL
RYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPY
VTPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQ
REELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDA
YLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGVWDTSEGQCVVMLQTK
FEKFFEKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFV
VQYYGLVLDLLLLGLTRASEIAGPPQMPNEFITYWDMKVETRHPIRLYSRYIDRVHILFR
FTHEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNR
LPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNE
QTKERTAIAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATV
HTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSD
LRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQ
NRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQR
HDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLT
NAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRA
HLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHRWPM
SKPSLVAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPT
GVMIGLDLAYNLHSAFGNWFPGSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPT
EPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFL
KVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDF
PNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSVSSYTAFSRLILI
LRALHVNNEKAKMLLKPDKTIITEPHHIWPSLNDDQWMKVEVALRDLILSDYAKKNNVNT
SALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTKTTNVHGDELIVTTT
SPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIAD
LRTQIAGYLYGVSPPDNPQVKEIRCIAMPPQWGTHQQVHLPAALPEHDFLNDLEPLGWMH
TQPNELPQLSPQDLTQHAKVLESNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGR
VNKDTGSSNPHGYLPSHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHASGMKYGVKL
GSPREYYHEDHRPTHFLEFSNLEEGDAITVVDREDKFT
NT seq
6957 nt
NT seq
+upstream
nt +downstream
nt
atgtggaataacaaccagattgctccaccgggaaccggtggatcttcgattctaccgcct
ccggcagcacaaccatcttatacagtgctcccttcaccagctgaggctgaggcaatgctc
gaggagaaggccaggaagtggcagcaactaaattcaaaacgatatagtgataaaaggaag
tttgggtttgttgagactcagaaagaggacatgcctccggagcacgttaggaagataatt
agagaccatggggacatgtcctccaaaaagtatcggcatgataaacgtgtttatctggga
gctcttaaattcatcccacatgcagtttacaagctcttagagaatatgcctatgccttgg
gagcaggtccgagatgtcaaggttttataccatatttccggagcaattacatttgttaac
gaaatcccatgggttgtcgagcccatatatcttgctcagtggggtacaatgtggatcatg
atgcggagggagaagagggatcggcgacatttcaagaggatgcggtttccaccatttgat
gatgaggaacctcctctagattatgcagataatctgttagatgttgatcctttggagcca
attcagttagagttggacgaagaagaagattctgctgtgtatacctggttttatgaccat
aagccccttgtgaaaacaaagctcatcaatggtccaagctaccgaaaatggcatctctcc
cttccaataatggcaactcttcaccggcttgcaggacaactactttctgacttgattgac
cgcaattatttctacttgtttgacatggagtcattctttactgcgaaggcattaaacatg
tgcatacctggtggccctaagtttgagcctctgtaccgtgacatggagaaaggggacgag
gactggaatgagttcaatgatataaacaagctcattatcaggtcccctctcaggacagag
tacagaattgcatttcctcatctatataacaataggccccggaaagtaaagctttgcgtg
tatcacactcccatgattatgtacataaaaacggaggatccagatttacctgctttttat
tatgatccgttgatacacccaataaccagcactaacaaggagcggcgtgataagaaagcc
tacgacgatgaggatgatgatgatttttatttgccagaaggagtagaacctttgcttaaa
gatacacagctttatacagacaccacagctgctgggatttccctgctatttgctcctcgc
ccattcaacatgagatctggtcgtatgcggcgggctgaagatatacctcttgtatcagag
tggtataaggagcattgccctccatcatatcctgttaaagttcgtgttagttatcagaaa
ctgctgaaatgttttgtgttgaatgagctgcatcatagaccccccaaggctcaaaagaag
aagcacttgttccgatctctccaagcaactaagtttttccagaccacagagcttgattgg
gctgaagcagggcttcaagtttgcaagcaggggtataacatgttgaatttgttgatacat
agaaaaaatttgaactaccttcaccttgattataatttcaacctgaagcctgtgaaaacc
ctcacaactaaggaacgcaagaagtcgcggtttggcaatgcctttcatctttgtcgtgaa
atacttcgtttgactaagcttttgacgggtatgtatcgttacaagtaccggctaatgcgg
cagatcagaatgtgcaaagaccttaagcacttgatttactatcgctttaatactgggcct
gttggaaaaggtcctggatgtgggttttgggcgccaatgtggagggtttggttgtttttc
cttcgtggtatagtgccgcttctagaacgttggttaggcaatttacttgcacgacagttt
gaagggcgccattcaaaaggagtggccaagactgttactaagcaacgtgtggagagtcac
tttgacttggagcttcgagcggctgttatgcatgatgtgcttgatgcaatgccagagggc
attaagcagaataaggcaagaactatattgcaacatctcagtgaggcatggcgctgttgg
aaagcaaatattccttggaaggttcctggcctgcctgttcccattgagaacatgattctt
cgttatgtaaagtcaaaagctgactggtggacgaatgttgctcactataaccgtgagcgt
atacgaagaggtgcaactgtcgataagacagtctgccgtaagaatcttggaagattgact
cgcctgtggctaaaggcagagcaggaacgtcaacacaattatttgaaagatggcccatat
gttacaccagaagaagcagttgccatttacacaacgacagtacattggttggaatcaaga
aagttctcccccattccattccctccgttgtcatacaagcatgacacaaagctgctcatc
cttgctctcgagaggttgaaggaatcttacagtgttgcagtgagattgaatcaacttcag
agagaagagttggggctcattgaacaagcatatgacaacccacatgaggcattgtcacga
attaagcgacatctcctcactcagcgtgctttcaaagaagttggaatagaatttatggat
ttatacagctacttgattccagtttatgagatagagcctcttgagaagattacggatgcc
tatcttgaccagtatttatggtatgaaggtgacaaacgccatctctttccaaactggatc
aagcctgcagattctgagccgcctcctctcttggtttacaagtggtgtcaaggtataaac
aatttgcaaggagtatgggacacgagtgaggggcagtgtgtggtgatgctccaaacgaag
tttgagaaattctttgaaaagattgacttgacaatgttaaaccggcttttgcgtttggtt
cttgaccataatattgcagattatgtcactgcaaagaacaatgttgtgttgtcctacaag
gatatgagtcatacaaattcatatggtctcattcggggtctccagtttgcttcttttgtt
gttcaatattatggtctggtgctggatctcttgcttcttggactgactcgtgctagtgag
attgctggcccgcctcagatgccaaacgagtttatcacttactgggatatgaaagttgag
acacggcatccaattcggctgtattctcggtatatagatcgcgtgcatatattgttccgg
ttcacccatgaggaggcccgtgatcttatccagcgatatctcactgaacatcctgatcct
aacaatgagaatatggttggttacaacaataagaagtgctggccaagagatgcaagaatg
agactgatgaaacatgatgtcaatcttggcagaagtgtcttctgggatatgaagaatcgt
cttccccgaagcatcacaactctggagtgggagaacagctttgtttctgtttatagcaaa
gacaatccaaacttgctgttcagcatgtgtggctttgaagtaaggatacttcctaaaatt
agaatgacccaagaagctttcagtaatacaagagatggggtctggaatctgcaaaacgaa
cagaccaaagaaagaacagcaattgctttcttacgggttgatgatgaacacatgaaagtg
tttgagaatagggttaggcagattctcatgtcttcagggtctactacattcacaaaaatt
gtcaataaatggaatactgccctaataggtctcatgacttatttccgggaagcaactgta
catactcaagagctgttagatttgttggttaaatgtgaaaacaagatccagacacgtatt
aaaattgggttaaactctaagatgccaagcaggtttcctcctgtcattttctacacccca
aaagaaattggaggacttggcatgttatccatgggtcacatattgattccccaaagtgat
ctccgttatagtcagcaaactgatgttggtgtgactcactttagaagtggaatgagtcat
gaagaggatcagctaattcccaacctttatcgctacatacagccatgggagagtgagttc
atcgattcacagcgtgtatgggctgaatatgcactgaaaaggcaggaagctcaggcacaa
aataggcgtttgacccttgaagatttggaagattcatgggataggggaataccacgtatt
aacaccttgtttcaaaaggacagacacactttggcatatgataaaggttggagggtgcgt
acagacttcaagcagtaccaagttttgaaacaaaatcctttctggtggacacaccagagg
catgatgggaaactatggaacttaaataactaccgaactgatgtcatccaagctcttgga
ggtgttgaaggaattcttgagcataccttattcaaaggaacatactttccgacttgggaa
ggtcttttctgggagaaggcatcaggatttgaggagtccatgaagtataagaagctaact
aatgcacagagatctggtctcaaccaaatacctaaccgtaggtttactctttggtggtca
ccaaccataaatcgggccaatgtctatgtgggtttccaagtgcagctagatctgactggg
attttcatgcacgggaagattcctacgttgaagatatctctcattcaaatattccgtgct
catttgtggcagaaaattcatgagagtgttgtcatggatctctgtcaggttttggatcag
gaattggatgcattggagattgaaactgtgcagaaggaaacaatccatccaaggaagagt
tataaaatgaacagctcttgtgcagatgttcttctctttgctgcccatagatggccaatg
tcaaagcctagtctagtggctgaatctaaggatgtgtttgatcagaaagcaagcaacaag
tactggattgatgtacagcttcgctggggagattacgactctcatgatatagagcgttac
acgcgggccaagtttatggattatacaacagataatatgtccatatacccatctccaact
ggggtaatgattggccttgatttggcatataacttgcattccgcatttggtaactggttt
ccggggtcgaagccattgcttcagcaggctatgaataagatcatgaagtcaaatcctgct
ttatatgtcttgagagagcggataagaaaaggtttgcagttgtactcttctgagccaact
gaaccgtatttatcttcccaaaactatggagagatcttcagcaatcaaataatttggttt
gttgatgacaccaatgtgtaccgtgttacaatccacaagacttttgaaggaaatctcaca
acaaaacccataaatggtgccatctttattttcaatccaaggactggccaactgtttctt
aaggtcatacatacaagtgtatgggcaggacaaaagcgtcttggtcagttggccaagtgg
aaaacagcagaagaggttgctgctcttgtgcgatctttgccagtagaagaacagccaaag
caaattattgttactcgtaaaggaatgttggacccattggaggttcacctgctggatttc
ccaaacattgttatcaagggaagcgagttacagcttccattccaggcatgcttgaagatt
gagaaatttggagacctaattttgaaagctacggagcctcaaatggttctgttcaacata
tatgatgactggttgaagagtgtatcatcatatactgcattctccaggctgattttgatt
ctgcgtgcacttcatgtaaataacgagaaggcaaagatgttactaaagcctgacaagaca
atcattaccgagcctcaccatatctggccttctctcaatgatgatcagtggatgaaggtt
gaggttgctctgagagatcttatactctcagactatgcaaagaagaacaatgtgaatact
tcagctctgactcagtctgagattcgtgacattatacttggagctgagataactccacct
tctcaacagcgacaacagatagcagaaattgagaaacaggcaaaagaagcaagtcagctg
acagcagtcacaactaaaactacaaatgttcatggtgatgaactaattgttacaaccact
agtccgtatgagcaggctgcatttgggtctaaaactgattggcgtgtcagagcaatatca
gccacgaacctgtaccttcgggtcaatcatatatatgtgaactctgaggatattaaggaa
actggatatacctatattatgcctaagaacatcttgaagaagttcatctgcatagcagat
ctgcggacacaaattgctgggtatctatatggtgtaagccctcctgacaatcctcaggtc
aaggaaatccgctgcattgcaatgccaccgcagtgggggactcatcagcaagttcatctt
ccagcagctcttccagaacatgattttctgaatgatttggagcctctgggatggatgcac
acacagccaaatgagcttcctcaattgtcgcctcaggatctcactcaacatgcgaaggtc
ctagagagcaacaagcagtgggatggggagaagtgcattattttgacctgcagctttact
ccaggttcatgctcattgactgcatataagcttactccatcaggttatgagtggggacgt
gtcaataaggacacgggtagcagcaatccacatggttaccttccttctcactatgaaaag
gtccagatgctacttagtgacagattccttggtttctacatggttccggataatggtcca
tggaattacaatttcatgggggtgaagcatgcatcaggaatgaaatatggggttaagctt
ggaagtcctcgagaatattatcatgaagaccacaggccgactcatttcttggagttcagc
aatttggaggagggcgatgccattactgtggttgatcgtgaggataaatttacgtag
DBGET
integrated database retrieval system
