Quillaja saponaria (soapbark tree): O6P43_019014
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Entry
O6P43_019014 CDS
T09778
Name
(GenBank) DNA excision repair protein ERCC-8
KO
K10570
DNA excision repair protein ERCC-8
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03420
Nucleotide excision repair
qsa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
O6P43_019014
09124 Replication and repair
03420 Nucleotide excision repair
O6P43_019014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
qsa04121
]
O6P43_019014
03400 DNA repair and recombination proteins [BR:
qsa03400
]
O6P43_019014
Ubiquitin system [BR:
qsa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
O6P43_019014
DNA repair and recombination proteins [BR:
qsa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
O6P43_019014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EML
NBCH_WD40
ANAPC4_WD40
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_SCAP
WD_LRWD1
WD40_MABP1-WDR62_1st
Beta-prop_Nup120_160
WD40_RFWD3
Beta-prop_RIG_1st
Beta-prop_WDR19_1st
Beta-prop_VPS8
Motif
Other DBs
NCBI-ProteinID:
KAJ7958259
UniProt:
A0AAD7PKJ5
LinkDB
All DBs
Position
8
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AA seq
443 aa
AA seq
DB search
MWKEIRDREVGKVQSNYFVNRIASDRISKIELSNNKDIVSPHKGAVNSLQVDLTEGRYLL
SGASDASVAVYDVQRATDYEAGGLIAKHKSIFVVDKQHEHGHKYAITSAIWYPIDTGLFI
TGSYDHHINVWDTNTTQVIMNFKMPGKVYRTAMSTSATSHMLIAAGTEDVQVRLCDITSG
AFVHTLSGHRDGVMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFLLLDQSQSQLGRRP
PILKRSMATKDSTSKPYTKQRAAQRKLANGNGTKQSPIGKVPAKGSARQRLHPGMLSSHD
RATAHYGAVTGLKITEDGMYLLSAGSDSRLRLWDVESGCNTLVNFETVRLQTSKPIQLAT
TQDSALAFVPCMRTVKAFDMWTGNTSVTFRGHYDCVNCCCFSLQDQELYTGGNDRQILVW
SPSKLIPDEMNERPAEDQDNWSD
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaggagatcagagacagagaagtgggaaaagtccaatcaaattattttgttaat
cgcattgcgtccgatcgaatttcgaagattgagctctccaataacaaagatatcgtgtcc
cctcataagggcgccgtaaattctcttcaggttgatttgacagagggaagatatttgtta
tctggtgcatcagatgcatcagtggctgtgtatgatgttcaacgggccacagattacgaa
gcaggtggtctaatagcaaagcacaagtccatatttgttgttgacaagcaacatgagcat
ggacacaaatatgccataacctcggccatatggtatcccattgacacgggtctgttcatc
acaggctcgtatgatcatcatataaatgtttgggatacaaataccacccaggtgataatg
aattttaaaatgcctggaaaggtctataggactgccatgtctacatcagctacatctcac
atgctgatcgctgcaggaactgaggatgttcaagtccgcctttgtgatattacttcaggg
gcatttgttcacacattgtctggtcaccgtgatggtgtcatgactgtggaatggtctact
tcaagtgagtgggtcttggttaccgggggatgtgatggtgcaatacgtttttgggacatt
aggcgtgccggctgttttcttcttttagatcagtctcaatctcagcttggaagacgccct
cctatccttaagcgctcaatggcaactaaggattcaacatcaaagccctatacaaaacaa
cgggcagcacaaaggaaacttgcaaatgggaatggtaccaaacagtcaccaattggtaaa
gttccagccaagggatctgcaaggcagagattacatccagggatgctgtctagtcatgat
cgtgccactgcccactatggtgctgtgactgggttaaaaataactgaagacggcatgtat
cttctaagtgcaggatctgattcaagattaaggttgtgggatgttgaatctggctgcaac
acacttgtgaactttgaaactgtacgcctacagaccagcaaacctattcagttagccact
actcaagattcagcccttgcttttgttccatgcatgagaactgtgaaagcatttgacatg
tggactggaaacacatctgtaacattccgtggccactatgactgtgtgaactgctgctgc
tttagcttacaagatcaggaattgtacacaggtggaaatgatagacaaatccttgtctgg
tcaccttctaaattaatccccgatgaaatgaatgaaagacctgctgaagatcaggacaac
tggagtgactga
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