Quillaja saponaria (soapbark tree): O6P43_019437
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Entry
O6P43_019437 CDS
T09778
Name
(GenBank) DEAD-box ATP-dependent RNA helicase-like protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03013
Nucleocytoplasmic transport
qsa03015
mRNA surveillance pathway
qsa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
O6P43_019437
09122 Translation
03013 Nucleocytoplasmic transport
O6P43_019437
03015 mRNA surveillance pathway
O6P43_019437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_019437
03041 Spliceosome [BR:
qsa03041
]
O6P43_019437
Enzymes [BR:
qsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O6P43_019437
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
O6P43_019437
Spliceosome [BR:
qsa03041
]
Complex C
Other components
EJC/TREX
O6P43_019437
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
O6P43_019437
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
KAJ7958767
UniProt:
A0AAD7PKS9
LinkDB
All DBs
Position
8:complement(5264643..5270572)
Genome browser
AA seq
427 aa
AA seq
DB search
MGETKDEGYEEELLDYEEEEEKAPDSVGTKVNGEVAKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVL
CHTRELAYQICNEFERFSRHLADLKVAVFYGGVNVKVHKDLLKNECPHIVVGTPGRILAL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDKLLLECNFPSICIHSGMSQEERLKRYRGFKEGHTRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCAADVDVLNNVQSRFEVDIKQLPEQID
TSTYMPA
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaaaggacgagggatacgaggaagagcttctcgattacgaggaggaagaa
gagaaggcgcctgactccgttggaactaaagtcaacggtgaagttgctaagaagggctac
gttggaatccacagttcaggattcagagactttcttttgaagccagagcttcttcgtgct
attgtggattcgggatttgagcatccttccgaagtgcaacatgagtgcatcccacaagcc
atcctgggcatggatgtaatttgtcaagctaaatcaggaatgggaaaaactgctgtcttt
gtcctatccactttgcagcagattgatcctgttgcaggccaagtttccgcacttgttctg
tgtcatactagggagttagcataccagatatgtaatgagtttgagaggttcagtagacat
ttggctgatcttaaggttgctgtcttctatggtggggtcaatgttaaagttcacaaggat
ctattgaaaaatgaatgcccccatattgttgttggaacacctggaagaatactggcattg
gctagagataaggatctttctctaaagaatgtcagacattttattctggatgaatgtgat
aaaatgctggaatcacttgacatgaggagagatgtgcaggagatattcaaaatgacccct
cacgataagcaagttatgatgttctctgcaacactcagcaaagaaattcgcccagtctgc
aaaaaatttatgcaagatccaatggaaatttatgtagatgacgaggccaagctgacactt
catgggctagtgcagcactacatcaaattgaaagaagaggaaaagaaccgcaagctaaat
gaccttcttgatgcacttgacttcaatcaagtagttattttcgtcaaaagtgttagcaga
gcagctgagttggacaagcttcttttggagtgcaactttccatccatatgcatacattct
ggcatgtcccaagaagaaaggttaaagcgctacaggggcttcaaggaagggcatacgagg
attcttgtagctactgatttggttggtaggggaattgacattgaacgtgttaacatagtt
attaactatgacatgccagattctgcagacacgtacttgcacagggttggcagagctgga
aggtttggcacgaaagggcttgcaattacatttgtatcatgtgctgctgacgttgatgtt
ctcaacaatgttcagtcgaggtttgaggtagatataaagcagcttcctgagcagattgat
acctcaacttacatgccagcatag
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