Quillaja saponaria (soapbark tree): O6P43_019506
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Entry
O6P43_019506 CDS
T09778
Name
(GenBank) RNA polymerase sigma factor
KO
K03093
RNA polymerase sigma-I factor
Organism
qsa
Quillaja saponaria (soapbark tree)
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsa03021
]
O6P43_019506
Transcription machinery [BR:
qsa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
O6P43_019506
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Raf1_N
KIF21A
Motif
Other DBs
NCBI-ProteinID:
KAJ7958850
UniProt:
A0AAD7LIL3
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Position
8
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AA seq
560 aa
AA seq
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MGLGFRLNLRCEIPIRCSHSFTISPFRPPSSPVRGREVFFNPARLSLLSTLCEEGEISQK
DPLRAYTSSTAVQTLDNDLSEIEEMKMNFRKRSRNGLPEMADGTRMSFEEGSSTSFTSLQ
PFKASHFRLLMENLGVLEGTFADSEAIGLEKDILMQLGKLGALHLFSTCLSRSLKSSNIF
EYSSAHPENIGEHKTNWRMGDHLPKVIIRSGKNERKKFRRERAVNANEVPSQSLLSENTR
EGLLPFPASSVKRISNSKNRRLMVAKNEAEMSKAIKELEKLQSIKEAMEKDTKQVVSLSC
WAEACGVDEKVLQQHLYFGWYCRDELIRSTRSLVLYLARNYRGTGIALEDLLQAGYMGVL
KGAERFDHTRGYKFSTYVQYWIRKSMSRMVARHARGILVPCSLSRAINQIQKARKSFHGT
SIKYPDDNEIAKITGLSLHKIRSASKCLRVVCSIDQKVGDCLAVKYMELTPDTSIKSPEE
AVIKQHMRKDINDLLKGLDSRERQILILRFGLKGYQSKSLEDIGKLFQVSKEWIRRIEKK
ALSKLQNEEIRANLSYYLDP
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgggtctgggttttaggctgaacctcaggtgcgaaattcctattcggtgttctcattcc
ttcaccatttcgcctttcaggcctccttcatctccagtcagaggcagggaagtttttttc
aaccccgcaaggttatcattgctgtcaacgctttgtgaggagggggagatttctcaaaaa
gatcctctgagagcttatacttcatcaacagctgtccaaaccttagataatgatctgtca
gagatagaagaaatgaagatgaactttagaaagaggtcaagaaatggtttacctgaaatg
gctgatggtactcggatgtcttttgaagagggaagttctacttcctttactagcttacag
ccattcaaggcatcacatttccgtttgttaatggaaaacctgggtgttttagaaggaaca
tttgcagattcggaagcaatagggttggaaaaggacatcctaatgcaactagggaagctt
ggagctctacatttattcagtacctgtctatcaaggtctcttaaatcctcaaatattttc
gaatattcttctgcacatcctgagaatattggagagcataagacaaactggagaatgggt
gaccacctgccaaaagttatcattcgctctgggaaaaacgaaagaaaaaaatttagaaga
gagagagcagtcaatgcaaatgaagttccttctcagtcattgctttcagaaaatactcgg
gaaggtcttctacctttccctgcttcatctgtaaaaagaatatcaaatagtaaaaataga
agactgatggttgctaaaaatgaggcagagatgtcaaaagcaataaaggaattagaaaag
ttgcagagcatcaaagaagcaatggaaaaggataccaagcaagtagttagtttgagttgc
tgggcagaagcgtgtggagtcgatgagaaggtgctacagcagcatttatattttggttgg
tattgccgagatgagcttataaggagcactcgttccttagttttatacctggcccggaac
tacagaggtacaggaatagcgttggaagatttgcttcaggcaggatatatgggtgtcctc
aaaggtgcagagaggtttgatcacacaagaggttataaattctcaacctatgtacagtac
tggataaggaaatcaatgtcaagaatggtggcgcggcatgctcggggaatcttagttcct
tgctccttgagcagggcaataaatcagatacaaaaggctcgaaaatcctttcatggtacc
agcatcaagtacccagatgataatgaaattgcgaaaatcaccggtctttctttacataaa
atcagatcggctagcaaatgtctaagagtcgtgtgttcaattgatcagaaagtgggggac
tgccttgctgtgaaatatatggaactaacacctgatacgtcgataaagagccctgaagaa
gctgtcataaagcagcacatgagaaaagacattaatgatctcctgaaaggattggattca
agagaaaggcaaatactaattttgcgatttggtcttaagggttaccaatccaagtctctt
gaggatatagggaagcttttccaagttagcaaggagtggataagacggatagagaaaaag
gctttatcaaagctacagaatgaagaaattcgtgcaaatttaagttattatctggatcca
tag
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