Quillaja saponaria (soapbark tree): O6P43_020278
Help
Entry
O6P43_020278 CDS
T09778
Name
(GenBank) DExH-box ATP-dependent RNA helicase
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O6P43_020278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_020278
Enzymes [BR:
qsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
O6P43_020278
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
O6P43_020278
mRNA degradation factors
3'-5' decay
Ski complex
O6P43_020278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
AAA_22
Asd-4
Motif
Other DBs
NCBI-ProteinID:
KAJ7959741
UniProt:
A0AAD7PL32
LinkDB
All DBs
Position
8
Genome browser
AA seq
1354 aa
AA seq
DB search
MDRIEAGNELAFRVGFSGYSGHLRVEPLSTVERSDPLRTLPDFILPPAFPTETPESIKDF
VEETYLIPRLDPDEFSPDKAGRQWDFDWFDMANVPLEPSLPRTVVVPIWELPFRRQTDGS
AQGKWEPNSVEVDVSELTSGAQESGPLPHISGHAKDFVRGSINNRPFRPGGLDDSQALER
ILPEGASNGEWVHEVLNGGPAQAVLPSLKQGLDLGALKPYPCSWNVYKDGSSLKSSSDEK
VSELSVQFDDLFKKAWEEDVVTEHEEEGHLSEMEPIKLEAEVIKEEVSSSAHEHQLSLDE
ILSVESGGSRLNLDGLIDGGGPQHKEAWAISGVSERIADLFYELLPDMVLEFPFELDKFQ
KEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCG
KFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVV
WEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLFYSGE
LYKICESEAFLPQGVKAAKEAFKKKNLNTVVGCGGSGPYVGTYASNDSSRVQKHETATRG
RQNKVSGSQHLGSVSGSGGGKQYNGNGQSSWGQRRSESSLWLMLITKLSKKSLLPVIIFC
FSKNRCDKSADSMTGTDLTSSSEKSEIRLFCDKAFSRLKGSDRNLPQVVRVQNLLRRGIG
VHHAGLLPIVKEVVEMLFCRGVIKILFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLL
PGEYTQMAGRAGRRGLDTIGTVVLMCRDEIPEESDLRHVMVGSATRLESQFRLTYMMILN
LLRVEELKVEDMLKRSFAEFHAQEKLPEKEKLLMLKLAQPAKTIECIKCEPTIEEYFETF
SEAETCSNQISEAVMQSPIAQQFLTPGRIVVVKSESAQNHLLGVVVKAPSANYMQYIVLV
VKPDLPSTTQDASSGANLQDKNTDFGQGYFVVPKSKRGLGDDYMTSSSARKGSGVINIKL
PHSASASGVGYEVRGVDGKQFLCICNRKIKIDQVGLLEDVNTSAYSKAVQLLLNLKSDGK
QYPPALDPVRELKIKDIELVSAYHKWTTLLEKMAKNQCYGCIKLEEHMKLAKEIKKHKEE
VNALKFQMSDEALQQMPDFQGRIDVLKEIGCIDEELVVQIKGRVACEMNSGEELICTECL
FENQLNELEPEEAVALMSAFVFQQKNASELSLTPKLAQAKQRLYNTAIRLGELQAHFNIQ
INPEEYVQDNLKFGLVEVVYEWAKGTPFADICELTDVPEGMIVRTIVRLDETCREFKNAA
AIMGNSALYKKMEIASNAIKRDIVFAASLYITGV
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atggatcggatcgaagcaggaaacgaactagctttccgggtcgggttctccgggtacagt
ggtcatctcagagtggagccgctttcgacggtggagcgctccgaccccctgagaacgctt
cccgattttattttgccacctgcttttcccacagaaacacctgaatctataaaggatttt
gtcgaagagacatatctaatcccaaggttggatccggatgaattttcacctgataaagct
ggaagacagtgggacttcgactggtttgacatggccaatgtacctctggagccatcactt
ccacgaactgttgtggttcctatatgggaattaccatttcgacgccaaactgatggatca
gcgcaaggaaaatgggaaccaaattctgtggaggtggatgtgtcagaactaacatcagga
gctcaagaatctggtccgctacctcacatttctggacatgcaaaggattttgttagggga
agcatcaacaaccgcccttttcgcccgggaggtttagatgattcccaagctttagaaaga
attcttcctgaaggtgcttctaatggagaatgggtccatgaagttctgaatggtggtcct
gctcaggcagttctgcctagtttaaagcagggattggaccttggtgcgctcaagccatat
ccatgttcttggaatgtatataaggatggaagttcacttaagagctcatcagatgaaaaa
gtgagtgagttgtcagtacagtttgatgacttgttcaagaaggcgtgggaagaggatgtt
gttacagaacatgaggaggagggtcatttgtccgaaatggagcctattaagttggaagct
gaagtaattaaggaagaggtatccagtagtgctcatgagcatcaattatcattggatgag
attttatcagttgaatcaggaggatcaagattgaatttggatggacttattgatggtggt
ggtcctcagcataaggaggcctgggctataagtggagttagtgaaaggattgcagatctc
ttttatgaacttcttcctgatatggtgcttgagtttccttttgaattggataagtttcaa
aaggaggctatttattatcttgaaaagggagagtctgtttttgtggctgctcatacatca
gctggcaagacagtagttgcagaatatgcatttgctttagcatctaagcactgtacccgc
gctgtgtatactgctccaataaaaacaataagcaatcagaagtacagagatttctgtggg
aaatttgacgttggacttctgactggtgatgttagcctgaggccagaggcttcttgtctt
atcatgaccactgaaatactaaggtcaatgctctaccggggtgcagatattattcgtgat
attgaatgggttatatttgatgaggtgcactatgttaatgatgtcgaaagaggtgttgtt
tgggaagaagtaattatcatgcttccaagacacatcaacattgtcctcctttctgccacg
gtaccaaacacagttgagtttgccgactggattggtcggacaaagcaaaagaaaatccgg
gttacagggactacaaagagacctgtcccattggagcactgcctgttttattctggagaa
ctttacaaaatatgtgaaagtgaggcatttctgcctcagggtgtgaaggctgctaaagag
gcattcaaaaaaaagaatttgaatactgttgttggttgtggtggttctggaccatatgtg
gggacttacgcatcaaatgacagttctcgggttcagaaacatgaaactgctactagaggc
agacaaaataaggtttctggttcacaacatctaggcagtgtctctggatctggtggaggg
aaacagtacaatggcaatggccagagcagttggggacaaaggagatcagaatcctccttg
tggttgatgcttattaccaagctttcaaagaaatcattgttacctgttattatattttgt
ttctcaaagaatcgctgtgataaatcagctgatagtatgactggaacagacctcactagc
agttctgagaaaagtgagatacgtcttttttgcgataaagcattttcacgactaaaggga
tccgacagaaatttaccacaggttgttcgtgtacaaaaccttcttcgtagagggattggt
gtgcatcacgctggacttctcccaattgttaaggaagttgttgaaatgctattttgccgt
ggcgtcatcaagatattgttttcaacggagacatttgcaatgggagttaatgcgcctgca
agaacagtggtttttgatactttaagaaagtttgatggtaaggagtttaggcagttatta
ccaggagaatatactcaaatggcgggtcgtgctggcagaagaggacttgatacgattggt
acagttgtgttgatgtgccgtgatgaaatcccagaagagagtgatttgaggcatgttatg
gttggaagtgcaacaaggctcgaatcccaatttcgtctcacctatatgatgatcctgaat
ctccttcgtgttgaagaattgaaggtggaggacatgcttaaaagaagttttgctgaattc
catgctcaggaaaaactcccagaaaaggaaaaacttctgatgctgaagctcgctcagcct
gcaaaaactattgaatgtataaagtgtgaacccaccattgaggaatactttgagactttc
tcagaagctgagacatgcagcaaccagatatcagaggcagtcatgcaatccccaattgcc
cagcaatttcttactcctggaagaattgtagttgtgaaatcagaatcagcccaaaaccat
ctgcttggagttgttgtgaaagctccttctgcaaattatatgcagtacattgtcctagtt
gtgaaacctgatttgccatccacaacgcaagatgcctctagtggtgctaatttgcaagat
aaaaacactgattttggccaaggttactttgtggtaccaaaatcaaaacgtggccttggg
gatgactatatgacctcttcttctgctcgcaaaggatcaggtgtcatcaacataaaatta
cctcacagtgcatctgcctctggagtaggttatgaagttagaggagttgacggtaaacag
tttctatgcatttgcaatagaaaaatcaaaattgaccaagttgggcttcttgaagatgtg
aacacttctgcctactccaaggcagttcaactgctgttgaatttgaaatcagatggaaaa
caatatcctccagccctggatcctgtgagagaattaaaaataaaagatatagagcttgtt
tctgcataccacaagtggactacactattggagaagatggcgaagaatcaatgttatgga
tgtataaagttggaagagcacatgaagttagcaaaagagataaagaagcataaagaagaa
gtcaatgctctcaaatttcaaatgtccgatgaagcactacagcaaatgccagactttcag
ggcagaatagatgttctgaaggagattggttgcatagatgaggagcttgttgttcaaata
aaaggccgagttgcatgtgagatgaactccggggaggaattgatatgcactgagtgcttg
tttgagaaccaactgaatgaattggaaccagaagaagctgtggcattgatgtctgctttt
gtgtttcagcagaagaatgcatctgaactctcgcttacacctaagctggctcaggctaaa
cagagattgtacaatacggcaataaggcttggagagcttcaagcccacttcaatatacaa
ataaatcctgaggagtatgtccaagataatctgaaatttggtctcgttgaagtggtgtat
gaatgggcaaagggtactccatttgctgatatctgtgagcttacagatgtccctgaaggc
atgatagtgcggacgattgtcaggttggatgagacgtgccgggaatttaaaaatgctgcc
gctattatgggtaattctgctctgtacaagaaaatggaaattgcttccaatgcaataaag
cgcgacattgtttttgctgctagcctgtacattacaggagtgtaa
DBGET
integrated database retrieval system
