Quillaja saponaria (soapbark tree): O6P43_021043
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Entry
O6P43_021043 CDS
T09778
Name
(GenBank) DExH-box ATP-dependent RNA helicase
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O6P43_021043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_021043
03012 Translation factors [BR:
qsa03012
]
O6P43_021043
Enzymes [BR:
qsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
O6P43_021043
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
O6P43_021043
Translation factors [BR:
qsa03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
O6P43_021043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
OB_NTP_bind
HA2_C
R3H
Ank_2
Ank_5
ATPase
nSTAND3
HA2_N
AAA_22
AAA_19
AAA_7
AAA_23
Rad17
AAA_16
Motif
Other DBs
NCBI-ProteinID:
KAJ7960626
UniProt:
A0AAD7PLW4
LinkDB
All DBs
Position
8
Genome browser
AA seq
1562 aa
AA seq
DB search
MARKGRIGRKGRKFKESKRKRQKSSVDEATLIRLNKQLEEFRASEDEVYTFEAGLSWNER
SVIHQLCWKMGMKTKRSGGGCKVSGRKRCISVYKNKKVSTMKGLDSLHCLEFSEVAKEVL
MDLFKHCPPGDGDMKEELVEKDNEKFEQRRRKKDDFFCKPLMAKEDIANRLEKLASALQK
APDVIHLTKEKSKLPIASFKDIITSTIDSHQVVLISGETGCGKTTQVPQFILDHIWGKGE
SCKIICSQPRRLSATSVAERIASERGENVGQNVGYKIRLESVGGRHSSIVLCTNGVLLKV
LVSEKADKSKAAPMRSDEYSGITHIVMDEIHERDRYSDFMMAVIRDMLPSYPNLHLILMS
ATIDAERFSRYFGGCPVINVPGFTYPVRTFYLEDVLSMVKSAENNHLDNTKLCPLADNPD
FDKEDKFALDEAINLAFNNDELDPLLELVSSEASPKLFNYQHSMTDLTPLMVFAGKGRLG
EICMLLSFGADCHLRGKDGTTALEIAERENQQEAAELLKNHMENAFSNSTEDQKLLDKYI
ATVNPELIDIVLIEQLLRKICTDSQDGGVLVFLPGWDDINRTREKLLMSPFFADTSKFSI
LSLHSMVPSVEQKQVFNRPPPGCRKIVLSTNIAETAITIDDVVYVIDTGRMKERSYDPYN
NVSTLQSSWISKASAKQRQGRAGRCKPGICYYLYSKVRASCMPDFQIPEIKRMPIEELCL
QVKLLDPSSKIEDFLKKILDPPVSETIHNAIIVLQDIGALSLDENLTLLGAKLGALPVHP
LTGKMLFFSLLMNCLDPALTLACAAEYRDPFTLPMLTVEKKKAVAAKLELASLYGGRGDQ
LAVVAAFECWKNAKTSSIQTRFCSKYFVSSSTMSMLSGMRIQLEKELIQTGFILPDVSSY
NSNAHVPGILHAVLVAGLYPNVGRLSTPKKSGKKFMVETASGSKIRLHSHSIISKLSFEK
TGDRPLIVYDEVTRGDGGMNIRNSTLVGALPLLLLSTEIAVAPAKDDDGDANNDGIDDAD
GEREDGMEMDNISRHEEKLMSSPDNSVRVVVDRWLCFRSTALDVAQIYCLRERLSVALLY
KVTHSRKVLPPILANTLHAIACILSYDGMSGIPETLECVDSHTSMENATEIDKSVTETSK
DMSQKGDKFLIQLMGNRYKDMHKSFSSRQESRVPVPMGKSILGPPPSHNDPLLISSPCSN
QNQNPPSEGPGLNGKNVPQGRRRKPKRDVIVIPIPCSAQDENGPQVSGPPPSHNVPLSIS
SPSSNQNQNPPTEGPGLNGKNAPQGRKRKRKRGDVIVIPIPCSAQDGNVPQVSGPPPSHN
VPLSISSPCSNQNQNPPTEGPGLNGKNAPQGNVPQVSGPPPSHNVPLSISSPSSNQNQNP
PTEGPGLNGKNAPQGRKRKRKRGDVIVIPIPCSAQDENGPQVSGPPPSHNVPLSISSPSS
NQNQNPPTEGPGLNGKNAPQGRKRKRKRGDVIVIPIPCSAQDENVPQVSGPPPSHNVPLS
ISSPSSNQNQNPATEGPGLNGKNAPQGNVPQVSGPPPSHNVPLSSSHLAQTTTRTLLQKA
LV
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atggctcggaaaggcagaataggcagaaagggcagaaaattcaaagaatccaaaagaaaa
cgccagaagtccagtgttgatgaagccacactgattcgattaaacaaacagctggaagag
tttcgagcttcagaagatgaagtgtacacgtttgaagctggcctatcctggaatgaacga
tctgtaattcatcaattatgctggaaaatgggcatgaaaaccaaaaggtctgggggaggg
tgcaaggtgtctgggcgcaagcggtgtatatctgtttacaaaaataagaaggttagcacc
atgaagggattagacagtcttcattgtcttgaattttcggaggtggcaaaagaagtattg
atggatttgtttaaacattgtccacctggtgatggagacatgaaggaggagttagttgag
aaggataatgagaaatttgaacaaagaagaagaaaaaaagatgattttttctgcaagcct
ttaatggccaaagaagatattgccaatagattggaaaaacttgcttcggcattgcagaag
gctccagatgtaatacaccttactaaagagaagtcaaagcttccaattgcatccttcaag
gatattattacgtcaacgattgattctcaccaggtggttctcatatctggcgagactggt
tgtggaaagaccacacaggttccgcaatttattttggatcatatttggggtaagggcgag
tcgtgtaaaataatttgcagtcagccccgacgtctatcggctacatcagttgctgagaga
atagccagtgaaaggggggagaatgttggacaaaatgttggatataagatacggctggaa
agcgtaggtgggaggcattcatcaattgtgctctgcacaaatggagttctgttgaaagtg
ttggtttctgaaaaagctgataagtcaaaggcagcacccatgaggagtgatgagtattct
ggaattactcacattgttatggatgaaattcatgaacgagatcggtattctgatttcatg
atggccgttatcagagacatgcttccttcatatccaaaccttcatctgatactgatgagt
gccactattgatgctgaacgtttttcgcgctatttcggcggctgcccagttatcaatgtc
ccggggttcacctatcctgttagaactttctacttggaggatgtactttctatggtgaag
tcagcagaaaataatcatcttgataatactaaactatgccccctggctgacaaccctgac
tttgacaaggaagataagtttgctttagatgaagctattaatttggcttttaacaatgat
gagttggatccactcttggaattggtttctagtgaagcatccccaaaactctttaattac
cagcattcaatgactgatcttacaccgttgatggtgtttgcgggaaaggggagactaggt
gaaatttgcatgctattatcttttggagcagattgccatttacgtggcaaagacggaact
accgcattggagattgctgagcgagaaaaccagcaagaagctgctgaattattgaaaaat
cacatggaaaatgctttttccaactccacggaagatcagaaattacttgataaatatata
gcaactgtcaatcctgaacttattgatattgttctgatagagcagctattgagaaaaata
tgtactgattctcaagatggaggtgtccttgtttttcttcctggatgggatgatataaat
agaactcgtgagaaattacttatgtccccttttttcgctgatacatcaaagttctcaata
ttatctcttcattccatggttccatctgtggagcaaaagcaggtttttaaccgcccgcct
cctggatgccgcaaaattgttctttcaacaaatattgctgaaactgccattaccattgat
gatgttgtgtatgtcattgacactggacggatgaaagaaagaagttatgatccttataat
aatgtatcaactcttcaatcttcttggatttcaaaggcaagtgccaagcaacgacagggg
cgtgcaggccgctgtaaacctggaatttgttattatctttattcaaaagttcgggcttct
tgtatgccagattttcaaattcctgaaattaagagaatgcctattgaggaactctgtcta
caggtgaagttgctggatccaagcagcaaaatagaagattttttgaagaagatactggat
cctccagtttcggagaccatacataatgctattatagttcttcaagatataggggcattg
tcacttgatgaaaatctaacgctacttggggcgaagttgggtgctcttcctgttcatcca
ttgacaggcaagatgctttttttttctctattgatgaactgccttgacccagcattgaca
ttagcttgtgctgctgagtatagagatcccttcactcttcccatgctaacagttgaaaag
aagaaagccgtagctgccaaacttgagcttgcttcattgtacggtgggcgtggggatcaa
ttagcagtagtagcagcatttgaatgctggaagaatgcaaagacgagtagtatacagaca
cgattctgttctaagtactttgtctcatcaagcaccatgagtatgttgtctggcatgcgt
attcaacttgaaaaagaactcattcagactggatttattcttccagatgtttcaagttat
aactcgaatgcacatgtacccggtatacttcatgcggtccttgtggctggtttgtatcca
aatgttgggagattgtctactcccaagaaaagcgggaaaaaattcatggtggagacagca
agtggtagcaaaattcgcttgcactctcattcaataatttctaagttgtcatttgagaaa
acaggtgatcgccctttaattgtatatgatgaggttactcgtggtgatgggggtatgaac
attaggaattctactcttgttggtgcacttccactcttactgctttcaactgagatagct
gttgctccagcaaaggatgatgacggtgatgccaacaatgatgggattgatgatgcagat
ggggaacgtgaagatggcatggagatggataatatcagtcgtcatgaagagaagttgatg
tcttctcctgataattcagttagagttgttgtagaccggtggctttgttttaggtcaacg
gcacttgatgttgctcagatatactgcttgagggagcgattatctgtggcattgttatac
aaggtaacacattcaaggaaagttctccctcccatccttgcgaacacgctgcatgctata
gcttgtattctatcttatgatgggatgtctggaataccagagactcttgaatgtgtagac
tcacacacttcaatggaaaatgcaactgagattgacaagtcggtgacagagacaagtaaa
gatatgagtcagaagggtgacaaatttcttatacagcttatgggcaacagatataaggac
atgcacaagagtttcagttctcgacaggaaagtagagtacctgtacctatgggaaaaagt
attttaggtcccccaccaagtcataatgatccactattgattagttcaccttgctcaaac
caaaaccagaaccctccctcagaaggccctggtttgaatggtaagaatgtaccacaaggc
cggcggagaaagcctaagcgtgatgtgatagtaataccaattccatgttctgcacaagat
gagaatggaccacaagtttcaggacccccaccaagtcataatgttccactatcgattagt
tcacctagctcaaaccaaaaccagaaccctcctacagaaggccctggtttaaatggtaag
aatgcaccacaaggccggaagagaaagcgtaagcgtggagatgtgatagtaataccaatt
ccatgttctgcacaagatgggaatgtaccacaagtttcaggtcccccaccaagtcataat
gttccactatcgattagttcaccttgctcaaaccaaaaccagaaccctcctacagaaggc
cctggtttaaatggtaagaatgcaccacaagggaatgtaccacaagtttcaggtccccca
ccaagtcataatgttccactatcgattagttcacctagctcaaaccaaaaccagaaccct
cctacagaaggccctggtttaaatggtaagaatgcaccacaaggccggaagagaaagcgt
aagcgtggagatgtgatagtaataccaattccatgttctgcacaagatgagaatggacca
caagtttcaggtcccccaccaagtcataatgttccactatcgattagttcacctagctca
aaccaaaaccagaaccctcctacagaaggccctggtttaaatggtaagaatgcaccacaa
ggccggaagagaaagcgtaagcgtggagatgtgatagtaataccaattccatgttctgca
caagatgagaatgtaccacaagtttcaggtcccccaccaagtcataatgttccactatcg
attagttcacctagctcaaaccaaaaccagaaccctgctactgaaggccctggtttaaat
ggtaagaatgcaccacaagggaatgtaccacaagtttcaggtcccccaccaagtcataat
gttccactatcgagtagtcaccttgctcaaaccacaaccagaaccctccttcagaaggct
ctggtttaa
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