Quillaja saponaria (soapbark tree): O6P43_021916
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Entry
O6P43_021916 CDS
T09778
Name
(GenBank) DEAD-box ATP-dependent RNA helicase-like protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
O6P43_021916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsa03041
]
O6P43_021916
03009 Ribosome biogenesis [BR:
qsa03009
]
O6P43_021916
Enzymes [BR:
qsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O6P43_021916
Spliceosome [BR:
qsa03041
]
Complex A
U1 snRNP components
U1 related factors
O6P43_021916
Complex B
O6P43_021916
Ribosome biogenesis [BR:
qsa03009
]
Eukaryotic type
Pre-60S particles
Helicases
O6P43_021916
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
Transformer
SWI2_SNF2
ERCC3_RAD25_C
AAA_19
Motif
Other DBs
NCBI-ProteinID:
KAJ7955303
LinkDB
All DBs
Position
9
Genome browser
AA seq
968 aa
AA seq
DB search
MGQQMPPQGIQSQQFKQGTPQNEGSHIRQQQAHQFTHQHMHYFPYQQGILPAGQQIPHNP
SGQPFESQQEFKSALPKMEEMEFQIGNQVGFSPSKFQQKIGSSVQSNQNIPTGFSSGQIA
HIGTHPGQSQQHGVSLPPLQQSPSMLQSQRGGSDSVHQHGSRFQNQISSAMMSGQPSNVH
PVGLKMGREDNLHGRAGVEYYYNSNKEGPMLGPQHPNIAPLPIPRNQQDMRISGAPFQKA
MSGPDSGSSGVTGHAMHNMYNHAVGGPPLSSTSLVRPAYVGSSDVTELSPAEVYRQQHEV
TATGGNIPAPFMTFEAAGLPPEILREIYSAGFSIPTPIQAQTWPVALESRDIVAIAKTGS
GKTLGYLMPAFMLLRQRRNNPQNGPTVLVLAPTRELATQIQDEAVKFGRSSRVSCTCLYG
GASKATQLKELDRGADIVVATPGRLNDILEMKKINFGQVSLLVLDEADRMLDMGFEPQIR
KIVNEIPPRRQTLMYTATWPKEVRKIASDLLVDPVQVNIGSVDELAANKAITQYVELVPQ
MEKQRRLEQILRAQERGSKVIVFCSTKRLCDQLARSIGYNFGAAAIHGDKSQGERDWVLN
QFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGISYTFI
SEQDRKHAADLIKVLEGANQLVPPEIREMALRGPPNFGKDRSGMKLFDSGSASVASRWDS
GGRGGMRDGGFGGRGGLGDGDGFGGRGGMRDGGFGGRGGMKDGGFGGRGGMRDVGGHGGR
GDFFSGRGNRGRGSGGPGGGHLGWGRSERGPHDRYNNLDGRGRGRGRGRGRFDDRRDIVN
RSRDRSYSRSRSRSRSLSRGRSRSRSWSRGRSYSRSRSRSRSNSSGRSCDRGHSRSRSYD
RYVRPPRVSKFDVMPTVEAPASGMSSISQGTQDNTILDTERVEQLPVVNSTESVHPDAVV
SLTRQSET
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggggcagcagatgccaccacaaggtatccagtcccagcagttcaagcaaggaactcca
cagaatgaaggctcacatattagacaacagcaagcccatcaattcactcatcagcacatg
cattattttccttaccaacagggcattcttccagcaggacagcagattccgcacaatcca
tcgggtcagccatttgaaagtcaacaggagtttaaatcagcattgccaaaaatggaggaa
atggagtttcaaattggtaaccaagttggattttcaccatccaagtttcagcagaagatt
ggctcttctgttcagagcaatcagaacattcctactggattcagttcaggccaaattgct
catataggtactcatcctggccaatcacaacagcatggtgtctccttaccccccttgcaa
cagtctccctctatgttacagtcgcagcgtggtggttctgattcagttcaccagcatggt
tctaggtttcaaaatcagatcagttcagctatgatgtctggtcaaccatccaatgtccat
cctgttggcttaaagatggggcgtgaggataatttacatggaagagccggggttgaatat
tactacaattctaacaaagaaggtccaatgctgggtcctcagcatccaaatattgcacca
ttacccatacctagaaatcaacaggatatgagaataagcggtgccccttttcaaaaggcc
atgtctggtcctgatagtggatcaagtggtgttacagggcacgccatgcataacatgtac
aatcatgcagtaggaggtccacctctgtcaagtacctctttggtcaggcctgcttatgtt
ggatcttcagatgttactgagctctcacctgctgaagtttatcgtcagcaacatgaagtt
acagcaacgggtggcaatattccagccccattcatgacgtttgaggctgctgggttacct
ccagagattttgagagagatatattctgctggcttctcaattccaaccccaatccaggct
cagacatggccagttgcactagaaagtagggacatagtggccattgctaaaacaggctct
ggaaaaacattgggatatttgatgcctgcattcatgcttcttagacagaggcgtaataac
cctcagaatggcccaacagtcttggttttggctccaacacgagagcttgccacacaaatc
caagacgaggctgttaagtttggccgatcttcaagggtctcttgcacgtgcttgtatggc
ggagcttcaaaagctactcagctaaaagagttagatcgtggagcagatatagttgtggca
acacctggtcggctgaatgacatacttgaaatgaagaagattaactttggccaagtttca
ctgcttgtgcttgatgaggctgatcgaatgcttgatatgggttttgagcctcaaatacgt
aagattgtgaatgaaatcccgccacgaagacaaactcttatgtacacagcaacatggccg
aaagaagtaagaaaaattgcaagtgatcttcttgttgatcctgtccaggttaacattggc
agtgtcgatgagcttgctgccaataaagctatcacacagtacgttgaactagtccctcaa
atggagaagcagaggcgcctggaacaaattctcagagcccaagagcgaggttctaaagtc
atagttttttgttccacaaagaggttgtgtgatcagcttgcacgtagcattgggtacaac
tttggggctgctgcaattcatggagataagtcacaaggtgagagagactgggttttaaat
cagtttcgaagtgggaagtcccctatactggttgccactgatgttgctgcccgtggactt
gacatcaaggatataagagtggtgataaactatgatttccctactgggatagaggactat
gtacacagaattggaaggactgggagggctggtgctactggaatctcgtatacttttatc
tctgagcaggaccggaaacatgctgctgatttaataaaagttttggagggagccaaccaa
cttgtgcccccagagatacgagagatggctttgcgtggcccacctaattttggcaaggat
cggagtgggatgaaactttttgactctggtagtgctagtgttgctagccgctgggactct
ggtggccgtggtggcatgagggatggtggctttggtggtcgcggtggcttgggagatggt
gatggatttggtggtcgtggtggcatgagagatggtggatttggtggccgtggtggcatg
aaagatggtggatttggtggccgtggtggcatgagagatgttggtggccatggtggcaga
ggtgatttcttctctggtcggggcaacaggggacgtggatctggcggccctggtggtggt
catcttggttggggtagaagtgaacgtggcccacacgatcgatataacaacttggatggg
cgaggacgggggcggggacggggacgtggacgttttgatgacagaagagatattgtcaat
aggagtagagacagaagttatagcagaagccgtagcagaagcaggagtttgagcaggggc
cgcagtcgaagccgcagctggtctcgtggccgtagctatagccgcagccgcagccgcagt
cgtagcaacagcagtggtcgaagctgtgaccgtggtcacagtagaagccgcagctatgat
agatatgttaggccaccgcgtgtcagcaaatttgacgtgatgccaacagttgaagctcct
gcatcggggatgtcttctatttctcagggtactcaagacaatacaatattggatactgag
cgtgtggagcagttaccagtggttaacagtactgagtcagtacatccagatgctgttgta
agcttgacccgtcaatcagaaacctaa
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