Quillaja saponaria (soapbark tree): O6P43_025987
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Entry
O6P43_025987 CDS
T09778
Name
(GenBank) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
O6P43_025987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsa03021
]
O6P43_025987
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_025987
Transcription machinery [BR:
qsa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
O6P43_025987
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
O6P43_025987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Transposase_24
zf-CCCH_3
Torus
Motif
Other DBs
NCBI-ProteinID:
KAJ7954401
UniProt:
A0AAD7PG71
LinkDB
All DBs
Position
10
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AA seq
649 aa
AA seq
DB search
MEDSEGGFNFDFEGGLEAAPANPAVSGPVIQSDSSSAANGGAPRTAAAVTSEPVAANIPG
RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKDRMPVCRFFRLYGECREQDCVYKHTNEDI
KECNMYKLGFCPNGPDCRYRHAKSPGPPPPIAEVLQKNQHLYSYNYNAANKFFQPRGASF
PQQVEKSQFPQGYNSVNQGVVGKPLTAESVNVQQQQDQQSQQQFSQTEMQNLPNGQPNQA
NKTAAPLPQGISRYFIVKSCNRENLELSVQQGDSSFPGLCKDDIQNWWVCWWGKLEYAHG
TAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPAIGEQLASLLYLE
PDSELMAISIAVESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESEEEEEEIFVQS
IGAATQGRGRGRGMMWPPHVPLGRGVRPLPGMQGFPPMMMGDGMSYGPVTPDGFAMPDLF
GVGPRAFAPYGPRFSGDFTGPPAMMFHGRPSQPGVFPRGGFGMMMNPARAPFMGGMGNPA
RAGRPVGMSPMFPPPPPPSSQNINQVVKRDQRTPGNDLSDRYSAGSEQGKCQDLLSPGRG
PGDNTQYKQGYKAHQEDPYANVNNFRNDESESEDEAPRRSRHGEGKKKR
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggaggattcagagggaggtttcaattttgactttgaaggcggcctagaagccgctcca
gccaaccctgctgtgtccggacctgtgatccaatccgactcttcttctgctgccaacggt
ggcgcaccccgtactgctgctgccgttacaagcgaacctgtggcggctaacattcctggg
aggcggagtttccggcagacagtatgccggcactggcttcgcagcctctgcatgaaagga
gatgcttgtggcttcttgcatcagtatgacaaggaccggatgccagtctgccggtttttc
agattgtatggtgagtgccgggagcaggattgcgtatataagcacacaaatgaggatatc
aaggagtgtaacatgtacaagttaggattttgtccaaatggccccgattgccggtatagg
catgcaaaatcgcctggacctcctccgcctattgcagaggtccttcaaaaaaatcagcat
ttgtattcttacaattacaacgctgcaaacaaattttttcaaccccggggtgctagtttt
cctcaacaagttgaaaaatctcagtttccacaaggttataactccgtcaatcaaggtgta
gttggaaaaccattgacagcagagtctgtcaatgttcagcagcagcaagatcaacagtcc
caacagcagtttagccagaccgagatgcaaaatcttccaaatggccagcctaatcaggca
aacaaaactgctgcgcctttgcctcaaggaatatctaggtattttattgttaaaagttgc
aatcgtgaaaatttggaattatctgtacaacaaggagactcgtcatttccagggttgtgc
aaagatgacatccagaattggtgggtctgttggtgggggaaattggaatatgcacatgga
actgctcattatgggcggaacttttctgtcaaatggctgaagttatgtgagctctccttc
cacaaaacacgccatttaaggaatccatacaatgagaatttaccagtaaagataagtaga
gattgtcaggaattggagcccgctattggtgagcagttggcttcgttactttatcttgag
ccagatagtgaacttatggcaatatcaattgcagtggagtcgaaacgagaagaggaaaaa
gcaaagggagtcaatccagacaatggaggagaaaatccagacattgtcccctttgaggac
aatgaggaagaagaagaggaagaaagtgaagaggaggaggaggagatctttgtccagagt
ataggagcagctactcaaggcagaggtaggggtagaggtatgatgtggccccctcatgtg
ccactaggacgcggggtcagacctctccctggaatgcaaggtttcccccctatgatgatg
ggtgatggaatgtcgtatggacctgttacacccgatggatttgctatgccagatcttttt
ggtgtgggacctcgtgcttttgctccttatggtcccaggttttctggtgattttacaggc
cctccagcaatgatgtttcacgggcgaccttcacaacctggggtgtttccacggggtggg
tttgggatgatgatgaatcctgcacgtgctccttttatgggagggatggggaaccctgct
cgagctggcaggccagttggtatgtctccaatgtttccaccacccccaccaccatcctcc
caaaacatcaaccaggttgtaaagagggatcaaaggacaccaggtaatgatcttagtgac
aggtatagtgcgggatcagaacagggcaagtgtcaagacttgctaagtccagggcgtggg
cctggtgataacacacagtataagcaaggatacaaggctcaccaagaagatccatatgct
aatgtgaataacttcagaaatgatgagagtgaaagtgaagacgaggcacctaggcggtca
aggcatggagaggggaagaagaaaaggtga
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