Quillaja saponaria (soapbark tree): O6P43_027618
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Entry
O6P43_027618 CDS
T09778
Name
(GenBank) Polyadenylate-binding protein
KO
K13126
polyadenylate-binding protein
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03015
mRNA surveillance pathway
qsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
O6P43_027618
09123 Folding, sorting and degradation
03018 RNA degradation
O6P43_027618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_027618
03041 Spliceosome [BR:
qsa03041
]
O6P43_027618
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
O6P43_027618
mRNA cycle factors
Stress granule specific factors
O6P43_027618
Spliceosome [BR:
qsa03041
]
Complex C
Other components
Complex C specific factors
O6P43_027618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RBD_DEAH11
RRM_3
RRM_RdRP1_2
MgtE_N
RBD_RDR6
FliG_M
Motif
Other DBs
NCBI-ProteinID:
KAJ7951596
UniProt:
A0AAD7PDI7
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All DBs
Position
11:complement(19058440..19061545)
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AA seq
339 aa
AA seq
DB search
MAQVQVQPQNQISKDNGTAAVGVANQFETASLYVGDLDPNVTDAQLYDFFVQMGVVVSVR
ICRDLWTRRSLGYGYVNYSNPQDAARALYELNFTPINEKPIRVMYSHRDPSIRKSGAGNI
FIKNLDQAIDHKALHDIFSAFGNILSCKVATDSSGQSKGHGFVQFDNEEAAQKAIEKLNG
MSLNGKPVYVESFLRKQKRVFSLLPPAVGIEKTGFGYKQQFVPGMRPGGGPMPNFFVPMV
QQAMRPGGRRLRDAALSQQIIIGDLASTLANATPDEQRRMLDENLSPLVEQLEPDDAAKI
TSRLLEMDQTEVLHLLGSLEALKAKVAKEKEVLRNFAQQ
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atggcacaagttcaggttcagcctcagaatcagatttcgaaagataacggcaccgctgca
gttggcgttgcaaaccagtttgaaacagcatcgctttatgttggggatcttgacccaaat
gtcactgatgcgcagctatacgacttcttcgtccaaatgggtgtggtggtttcagttagg
atctgtagggatttgtggacccgccgatcgcttggttacggttatgtcaattatagcaac
ccgcaagacgctgcaagggcattgtatgaactgaacttcactcctatcaatgaaaagccc
attcgagttatgtattcccatcgtgaccctagtattcgcaaaagtggggcaggaaatata
tttattaagaatttggaccaggcaattgaccacaaagcattacatgatatattttctgca
ttcgggaatattctttcctgcaaggtagctactgattcctcaggccaatcaaaaggccat
ggctttgtacaatttgataatgaggaagctgcccaaaaagctatagagaagttaaatggc
atgtcgttgaatggtaagccagtctatgtggagtccttccttcgcaagcaaaaaagagtt
ttcagcctgctaccacctgcagttggaattgaaaaaactgggttcgggtacaaacaacaa
tttgtacctggcatgaggcctggtgggggaccaatgccaaatttctttgtgcctatggtt
cagcaggctatgcgtcctggtggcagacgtctgcgtgatgcagctttgtctcagcaaatt
attataggggatttggcttctacccttgcaaatgctactccagacgagcagaggaggatg
ctggatgagaatctttccccccttgtggaacagctggaacctgatgatgctgctaagata
accagcaggcttctggagatggatcaaactgaggttctgcatcttctcgggtcactagaa
gctttgaaagctaaggtggccaaggaaaaggaggtactgaggaattttgctcagcagtag
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