Quillaja saponaria (soapbark tree): O6P43_027887
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Entry
O6P43_027887 CDS
T09778
Name
(GenBank) Pre-mRNA-processing-splicing factor
KO
K12856
pre-mRNA-processing factor 8
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
O6P43_027887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsa03041
]
O6P43_027887
Spliceosome [BR:
qsa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
O6P43_027887
Complex C
U5 SnRNP specific factors
O6P43_027887
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-ProteinID:
KAJ7951909
UniProt:
A0AAD7L5U6
LinkDB
All DBs
Position
11
Genome browser
AA seq
2349 aa
AA seq
DB search
MWNNNQIAPPGTGGSSIQPPPAAQPSYTVLPSPAEAEAMLEEKARKWQQLNSKRYSDKRK
FGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPW
EQVRDVKVLYHISGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFD
DEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHLS
LPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDE
DWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLGVYHTPMVMYIKTEDPDLPAFY
YDPLIHPITSTNKERRDKKTYDDEDDDDFYLPDGVEPFLKDTQLYTDTTAAGISLLFAPR
PFNMRSGRMRRAEDIPLVSEWFKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKK
KHLFRSLQATKFFQTTELDWAEVGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKT
LTTKERKKSRFGNAFHLCREILRLTKLVIDANIQFRLGNVDAFQLADGLQYTFSHVGQLT
GMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLE
RWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTI
LQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDK
TVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPP
LSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQR
AFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPP
LLVYKWCQGINNLQGIWDTSDGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYV
TAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPN
EFITYWDTKVESRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYN
NKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFVSVYSKDNPNLLFSM
CGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAIAFLRVDDEHMKVFENRVRQIL
MSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMP
SRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNL
YRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRH
TLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHT
LFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVY
VGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESVVMDLCQVLDQELDALEIET
VQKETIHPRKSYKMNSSCADVLLFAAHRWPMSKPSLVAESKDVFDQKASNKYWIDVQLRW
GDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNWFPGSKPLLQQ
AMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRV
TIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAAL
VRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILK
ATEPQMVLFNIYDDWLKSVSSYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHIW
PSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAE
IEKQAKEASQLTAVTTKTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVN
HIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQVKEIRCIAMP
PQWGTHQQVHLPAALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTQHAKVLENNKQWDG
EKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKETGSSNPHGYLPSHYEKVQMLLSDRF
LGFYMVPDNGPWNYNFMGVKHASGMKYGVKLGAPREYYHEDHRPTHFLEFSNMEVGEATS
MGDHEDKFT
NT seq
7050 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacaaccagattgcgccaccgggaaccggtggctcttcgattcagccacca
ccggcagctcaaccatcatatacagtgcttccgtcaccagctgaggctgaggcaatgcta
gaggagaaggccagaaaatggcagcaattgaattcgaaacgatatagtgataaacggaag
tttgggtttgttgagactcagaaagaggacatgccgccagagcatgttaggaagataatt
agagatcatggggacatgtcatcgaaaaagtaccggcatgataaacgtgtttatctcgga
gctcttaaatttattccacatgctgtttacaagctcctagagaatatgcctatgccctgg
gagcaggttcgggatgttaaggttttgtaccacatttctggggcaataacatttgttaat
gaaataccatgggttgttgagcctatatatcttgctcagtggggtacaatgtggatcatg
atgcgaagagagaagagggatcggcggcatttcaagaggatgcgctttcctccatttgat
gatgaggaacctcctctagattatgcagataatctcttagatgttgatcctctggagcca
attcaattagagttggatgaagaagaagattctgctgtatacacttggttttatgaccat
aagccccttgtgaaaacaaagctcattaatggtccaagctaccgaaaatggcatctctct
cttccaataatggcaactcttcatcggcttgcaggacagctactttctgatttgattgac
cgcaattatttctacttgtttgacatggagtcgttctttacagctaaggcattaaacatg
tgcatacctggtggccctaagtttgagcctctgtaccgtgacatggagaaaggggacgag
gactggaatgagttcaatgatattaacaagcttattatcaggtcccctcttaggacggag
tacagaattgcatttcctcatctctataacaataggcctcggaaggtaaagcttggtgta
tatcacactcccatggttatgtatataaaaactgaggatccagatttacctgctttttat
tatgatccgttgatacacccaataaccagcactaacaaggagcggcgtgataagaaaacc
tatgatgacgaggacgacgatgatttttatttaccagatggtgtggaacctttccttaaa
gatacgcaactttatacagacacaacagctgctgggatttccttactatttgctcctcgc
ccttttaacatgagatctggtcgtatgcggcgagcagaagatatacctcttgtgtcggag
tggtttaaggagcattgtcctccatcatatcctgtcaaagttcgggttagttatcagaaa
ttgctgaaatgttttgtgctgaatgaactgcatcatagaccccctaaggctcaaaagaag
aagcacttgttcagatccctccaagcaactaagtttttccagaccacagaacttgattgg
gctgaagttgggcttcaagtttgtaagcaggggtataacatgttgaatctgttgattcat
aggaaaaatttgaactaccttcaccttgattataatttcaatttgaagcctgtgaaaacc
ctcacaacaaaagaacgcaagaagtcacggtttggtaatgcatttcatctttgccgtgaa
atccttcgattgactaagcttgtcatagatgccaatatccagtttcgtttaggtaatgtg
gatgcatttcagttggctgatggactacaatatactttttcacatgttgggcagttgacg
ggtatgtaccgttacaagtataggctaatgcggcagatcagaatgtgcaaagatcttaag
cacttgatttactatcgctttaacactggtcctgttgggaaaggtcctggatgtgggttt
tgggcaccgatgtggagagtttggttgttcttccttcgtggtatagtgcctcttttggaa
cgctggttaggcaatttacttgcacgacagtttgaagggcgccactcgaaaggagtggcc
aagactgttactaagcaacgtgtggaaagtcactttgacttggagcttcgagcagctgtt
atgcatgatgtgcttgatgcgatgccagagggtattaagcagaataaggcgagaactata
ttgcaacatctcagtgaggcatggcggtgttggaaagcaaatattccttggaaggttcct
ggcttgcctgttcccattgagaacatgattcttcgttatgtaaagtcaaaggcagactgg
tggacaaatgttgctcattataaccgtgagcgtatacgaaggggagcaactgtcgacaag
acagtctgtcgtaagaatcttggaagacttactcgcctctggctaaaggcagagcaggag
cgtcaacacaattatttgaaagatggtccatatgtgacaccagaagaagcagttgcgatt
tacacaacaacagtacattggttggagtcaagaaagttctcccccattccattccctcct
ttgtcatacaagcatgacacaaagctgcttatcctcgctctggagaggttgaaggaatct
tatagtgttgcagtgagattgaatcaacttcagagagaagagttgggactcattgaacaa
gcttatgacaaccctcacgaggctttgtcacgaatcaagcggcatctcctcactcagcgt
gctttcaaagaagttggaatagaatttatggatttatacagctatttgattccagtttat
gagatagagcctcttgagaagattacggatgcatatcttgaccaatatttatggtatgaa
ggtgacaagcgccatctctttccaaactggatcaagcctgcagattctgagccacctcct
ctcttggtttacaagtggtgtcaaggtataaacaatttgcaagggatatgggacacaagt
gacgggcagtgcgtagtgatgcttcaaacaaagtttgagaagttcttcgaaaagattgac
ttgacaatgttgaacaggcttctacgcctggttcttgaccataatattgcggattatgtc
actgcaaagaacaatgttgtattgtcctacaaggatatgagtcatacaaattcatatggt
ctcattcgtggcctccagtttgcttcttttgtcgttcaatattatggtctggtgctggat
ctattgcttcttggactgactcgagccagtgaaattgctggcccaccccagatgccaaat
gagtttatcacttactgggacacaaaagttgagtcacgacatccaattaggctgtattct
cggtatatagatcgtgtgcatatattgttccggttcacccatgaggaggcccgtgatctt
atccagcgatatctcactgaacatcctgatcctaacaatgaaaatatggttgggtacaac
aataagaagtgttggccaagagatgcaagaatgagactgatgaaacatgatgtcaatctt
ggcagaagtgttttctgggacatgaagaatcgtcttccccgaagtatcacaactctggag
tgggagaacggctttgtttctgtctacagcaaagacaacccaaacttgctattcagcatg
tgtggctttgaagtacggatccttcctaagattagaatgactcaagaagcgttcagcaat
acaagagatggagtctggaatctacaaaatgaacagaccaaggaaagaacagcaattgcc
ttcttaagggttgatgatgaacacatgaaagtgtttgagaatcgggttaggcagattctc
atgtcttcagggtctactacattcacaaaaattgtcaataaatggaatactgctctaata
ggtctcatgacttatttccgggaagcaactgtacatactcaagagctattagatttactg
gttaaatgtgagaacaagatccagacccgtattaaaattgggttgaactctaagatgcca
agcaggtttcctcctgtcattttctacacccccaaagaaattggaggacttggcatgtta
tccatgggccacatattgattccacaaagtgatctccgttacagtcagcagacagatgtt
ggtgtgactcacttcagaagtggaatgagtcatgaagaggatcagctaattcccaacctt
tatcgctacatacagccatgggagagtgaattcatcgattcacagcgtgtgtgggctgaa
tatgcactcaaaaggcaggaagcacaagcacaaaataggcgcttgacccttgaagatttg
gaagattcttgggaccggggaataccacgtataaacaccttatttcaaaaggacagacac
actttggcatatgataaaggttggagggtgcgtacagacttcaagcagtaccaagttttg
aaacaaaacccattctggtggacacaccagaggcatgatgggaaactgtggaacttaaat
aactaccgaacagatgtgatccaagctcttggtggtgttgaaggaattcttgagcatacc
ttattcaagggaacatactttccgacttgggaaggtcttttctgggagaaggcatcaggt
tttgaggagtcaatgaagtataagaagctaactaatgcacagagatctggtctcaaccaa
atacctaaccgtaggtttactctttggtggtcaccaactataaatcgggccaatgtatat
gtgggtttccaagtgcagctggatctgactgggattttcatgcatgggaagatcccaacc
ttaaagatatctcttattcaaatattccgtgctcatttgtggcagaaggttcatgagagt
gttgtcatggatctctgtcaggttttggatcaggagttggatgccttggaaattgaaact
gtgcagaaggaaacaatccatccaaggaaaagttataaaatgaacagctcctgtgcagat
gttcttctctttgctgcccatagatggccaatgtcaaagcctagtctggtggctgaatct
aaggatgtgtttgaccaaaaagcgagcaataagtactggattgatgtacagcttcgctgg
ggagattatgactctcatgatatagagcgttacacccgggccaagtttatggattatacc
acagataatatgtcgatatacccttctccaactggagtgatgattggcattgatttggca
tataacttgcattctgcatttggtaactggtttccgggatcgaagccacttcttcagcag
gctatgaataagatcatgaagtcaaatcctgctttatatgtcttgagagagcggataagg
aaaggtttgcaattgtactcttctgagcctaccgaaccgtatttatcttcccaaaactat
ggagagattttcagcaatcaaatcatatggtttgttgatgacaccaatgtgtaccgcgtt
acaatccacaagacttttgaaggaaatctcacaacaaaacccatcaatggtgccatcttt
attttcaatccaaggactggccagctgtttctcaaggtcattcatacaagtgtgtgggca
ggacagaagcgtctcggtcagttggccaagtggaaaacagcagaagaagttgctgctctt
gtgcgatctttgccagtagaggaacagccaaagcaaattattgtgactcgaaaaggaatg
ttggacccattggaggttcacctgctggatttcccaaacattgttattaagggaagtgaa
ttgcagcttccattccaggcatgcttgaagattgagaaatttggagacctaattttaaaa
gctacagagcctcaaatggttctgttcaacatatatgatgactggttgaagagtgtatca
tcttatactgcattctccaggctgattttgattctgcgtgcacttcatgtgaataatgag
aaggcaaagatgttactaaagcctgacaagacaatcataactgagcctcatcacatctgg
ccgtctctcactgatgaccaatggatgaaggttgaggttgctttaagagatcttatactc
tcggactatgccaagaagaacaatgtgaatacttcagctctgactcagtctgaaattcgt
gatattatacttggagctgagataactccaccttctcaacagcgacaacagattgcagaa
attgaaaaacaggcaaaagaagcaagtcagctgacagctgtcacaactaaaactacgaat
gtacatggtgatgaactcattgttacaaccactagtccatatgagcaggctgcatttggg
tctaaaactgattggcgtgtcagagcaatatcagcaacaaacctttacctccgggtcaat
catatttatgtgaattctgaggatattaaggaaactggatatacctatattatgcctaag
aatatcttgaagaagttcatctgcatagcagatctgcgcacacaaattgctgggtatcta
tatggtataagccctcctgacaatcctcaggtgaaggaaatccgctgcattgcaatgcca
cctcagtgggggactcatcagcaagttcatcttccagcagctcttccagagcatgatttt
ctgaatgatttggaacccttgggatggatgcacacgcaaccaaatgagcttcctcagttg
tcccctcaggatctcactcaacatgctaaggtcctagagaacaacaagcagtgggatgga
gagaagtgtattattttgacatgcagctttactccaggttcatgctcattgactgcatat
aagctgactccatcaggttatgagtggggtcgggtcaataaggaaacaggtagcagcaat
cctcatggttaccttccctctcattatgaaaaggtccaaatgcttcttagtgatcggttt
cttggtttctatatggttccggacaatgggccatggaattacaatttcatgggagtgaag
catgcatcgggcatgaagtatggggttaagctcggagcaccccgtgaatattatcatgag
gaccacaggcctactcatttcttggagttcagcaatatggaggtgggtgaagccacttct
atgggagatcatgaggacaagtttacatag
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integrated database retrieval system
