Quillaja saponaria (soapbark tree): O6P43_030014
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Entry
O6P43_030014 CDS
T09778
Name
(GenBank) Regulator of nonsense transcripts UPF3
KO
K14328
regulator of nonsense transcripts 3
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03013
Nucleocytoplasmic transport
qsa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
O6P43_030014
03015 mRNA surveillance pathway
O6P43_030014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_030014
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
O6P43_030014
mRNA cycle factors
P-body specific factors
O6P43_030014
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-ProteinID:
KAJ7949710
UniProt:
A0AAD7PCE7
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All DBs
Position
12
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AA seq
495 aa
AA seq
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MKDPLHKTKVVIRHLPPSLTHSDLLQQLDDQFSGRYNWFSFRPGKNSQKQWRYSRAYIGF
KHPEDVFQFAEFFDGHVFVNEKGAQHRAIVEYAPSQRVPKQYTKRDGRDGTIYKDPDYLE
FLKLIAKPAEHLPSAEVQLERKEAEQAGASKEAPIVTPLMEYVRQKRAVGSGAQIKAPSA
VAKVRRRSRAASPSKPGSTNSKRGSEKRKYIQKNGSKSGSRKDKSAFIVVPRREEGISKS
ETVQGIEGSVSGIPLTADSGKKKFLLLKGKEPEIPHVLDDKLQQQSVSSVRNLSLSVPKQ
NQRRDASGRLIRSILSNSEPQQKIQILSPENGKRPPRPTSARSGSNDLVPRHEANSIISE
GDVKKASDAKFTKKDLHGPEGLVEKQEKRTRNKDRPDRGVWTPLRRSDVSHASTTSPGEM
KDVQYRSRSGEISASASGHNSSSLENGSHKHFGRHGATLIMKDDGVNEGKSSKRGVAWHS
AHEKQMWVQKSSSGS
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatcctttgcataagaccaaagtggtgattcggcacttgcctccatccctaact
cactccgatctcttacaacaacttgacgatcaattttctggccgctacaattggttctct
ttccgtcctgggaagaacagccagaagcaatggaggtattcccgagcttacattggcttc
aagcatcctgaagatgtatttcagtttgctgaattctttgatggacatgtctttgttaat
gagaaaggtgctcaacatagggctatagttgaatatgcaccttctcagcgtgttccaaag
caatacaccaaaagggatggtcgtgatgggactatttataaagatccggattacttggag
ttcctcaaacttattgcaaaacctgctgagcatcttcccagtgcagaagtacagttggaa
agaaaagaagctgaacaagctggtgcttccaaagaagctcctattgtgacgcccctaatg
gaatatgttcgtcagaaacgagctgttgggagtggagcccagataaaggctccatcagct
gttgcaaaggtcagaagaagaagcagagctgcttcacctagcaagcctggctcaactaac
agtaaacgaggctctgagaagagaaagtatattcaaaagaacggttcaaaaagtggaagt
aggaaggacaaatcagcatttattgtggtaccccgccgagaggaaggaatttccaaaagt
gaaactgtacaaggcattgaaggttctgtttcgggaattcctttaactgctgactctgga
aagaaaaaattcctgcttcttaaagggaaagagccggaaatacctcatgttcttgatgac
aagttacaacaacagagtgtatcatctgttagaaatttgtctctttctgtaccaaaacag
aatcagaggcgcgatgctagcggaaggttgattcgaagcatactttcaaatagtgaacct
caacagaaaattcaaatattgagtcctgagaatggcaagcgaccacctcggcctaccagt
gcaaggtcgggctcaaatgatttagtccctcgtcatgaagcaaactcgattatttctgaa
ggcgatgtcaaaaaggcttctgatgcaaagtttacaaagaaagatctgcatggtcctgaa
ggtcttgttgagaaacaagaaaaacgtacaagaaacaaggatagacctgatcgtggtgtt
tggactcctcttcgtcgatctgatgtttcacatgctagtactacttcccctggagagatg
aaagatgttcagtatagaagtagaagtggggaaatttcagcctctgcgtctggacataat
agttcctctctggaaaatggttctcacaaacattttggtcgccatggagctacactcata
atgaaggatgatggtgtgaacgaggggaagtcttccaaaagaggtgttgcttggcatagt
gcccacgagaaacaaatgtgggtgcagaagtcatcttcggggtcttga
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