Quillaja saponaria (soapbark tree): O6P43_031220
Help
Entry
O6P43_031220 CDS
T09778
Name
(GenBank) polyadenylation and cleavage factor-like 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
O6P43_031220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsa03021
]
O6P43_031220
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_031220
Transcription machinery [BR:
qsa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
O6P43_031220
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
O6P43_031220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-ProteinID:
KAJ7946260
UniProt:
A0AAD7P926
LinkDB
All DBs
Position
13
Genome browser
AA seq
896 aa
AA seq
DB search
MESEKLLFARENPRTLVFSSGRVVSASTTKSVPNELGQKPASPILDKFKVLLKQREDELR
DFGEDDVPPPSTEEIVQLYELLLSELSFNLKPIITDLTIIAGEQKDHAKGIADAICARIL
EVSAEQKLPSLYLLDSIVKNISGEYVRYFSFRLPEVFCEAYRQVQPNLHQAMRHLFGTWS
AVFPTSLLRKIETQLQFSQAVDKQSSGLNPLRSSESPRPTHGIHVNPKYLRQLDESVDNV
GAERMNSIGRVGHTSLGLGVSKVHQSSTVRVGRPLSPSRIGLERSLPSSVDEYAVDSSTT
RIAERESSSQPAFDYGVGKAIGRKDLNEWRKNQCSDDSRKRYESRTIYSLSNGNERQCPR
ALIDAYGSEKGKGDSSIKPLLVEHLDVNGIDSKVPPTSWKNTEEEEFDWEDMSPTLLDHS
RNNDFLLSSLPTQHHFSPRGRARNLQMSSSIDNLLNADAKSYGLSSVASRMGSSGFESIN
ADARPSLIPASFGIRPAVNVFAACPPTSNAGYPFHNHIGNQFGSITVNTATVNQGPNKSL
FMPEQQLNSFENKIQSMTKLPQLPYQHAGLISSTPQNRGQFTASSQLQFFPSREFLPVSS
VPFIQGCSQGHGASISIAMSNSLPLVQLPLTFPNIANNSIHLQGGSLLPLSPGPPLASSQ
MIPNQNAGPVVSNQQPGGSYSGLIGSLMAQGLISLTKETPVQDSVGIEFNPDALKFRHES
AIAYLYTDLPRQCTTCGLRFKCQEEHRSHMDWHVTKNRMSKNRKQKPSRKWFVSKSMWLS
GAEALGTDAAPGFLPIETVEEKKDDEEMAVPADENQNVCALCGEPFDEFYSDETEEWMYK
GAVYSNAHKGGMDRSQLGPIVHAKCRPESSVVTPEDFGQDEGGTTEEGSQRKRMRN
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atggaatcggaaaaactgttatttgcccgagaaaaccctagaaccctagttttctcgagt
gggcgtgtagtgtctgcctccaccacaaaatctgtacccaatgagcttgggcagaagcca
gcgtctccaatattggacaaattcaaggttttgctaaagcaacgggaagatgaactgagg
gattttggtgaagacgatgtgccaccaccaagcacagaagaaattgtgcaactttatgag
cttttactgtcggaactttccttcaatttgaaacccattattacggatcttacgatcatt
gccggcgagcagaaggaccacgccaagggcattgcagatgcaatttgtgctaggattctt
gaggtgtcagctgagcaaaaattgccttccctttatctcttggacagtattgtcaagaac
ataagtggggagtatgttcgatacttctctttccgcctgcctgaagttttctgtgaggca
tacaggcaggttcagcctaatttgcatcaggctatgcgccatctctttggcacctggtct
gctgtgtttccgacctcccttttacgcaagattgaaacacagctgcaattttctcaagct
gttgacaaacagtcatccggattgaatcccttgaggtcttctgaatctcctcgaccaact
catggcatacatgttaatccaaaatacttgcgtcagctggacgaatcagtggataacgtt
ggagcagaaagaatgaactcgataggaagggttggccatacaagtcttggccttggggtt
agcaaggttcatcaatcttcaactgtcagggttggaagacccttgtcgccttcaagaatt
ggacttgagaggtctttaccatcatcagttgatgaatatgcagtggacagctctactact
aggattgctgagagggagtcttcatctcagcccgcttttgattatggagttggtaaagca
attggcagaaaagatttgaatgaatggcggaaaaatcagtgttctgatgatagtcggaag
agatatgaaagtcgtaccatatatagccttagtaatggtaatgaacggcaatgtccaaga
gctttgattgatgcatatggaagtgaaaaaggcaaaggagattcaagcattaagccttta
ctggttgaacaccttgatgtaaatggtatagacagcaaggtacctccaacatcatggaaa
aatactgaagaggaagagtttgattgggaagatatgagcccaacgttattagatcacagt
aggaataatgatttcttgctctcatcccttcctacccaacaccactttagccctagaggt
agagcaaggaatctgcagatgtcttcttctatcgacaaccttctcaatgctgatgcaaaa
tcttatgggctctcatctgttgcctctagaatgggttcttctggttttgagtctattaat
gcagatgctcgtccatctcttataccagcttcatttgggataaggcctgctgtaaatgtg
tttgctgcttgtccccccacctcaaacgcaggctatccattccacaatcatatcgggaac
cagtttgggtcaataactgtgaataccgccactgtgaatcaaggtccaaataaatcctta
tttatgcctgagcaacagttgaatagttttgaaaacaaaattcagagtatgacaaagctt
ccccagttgccttatcagcatgctgggttgatttcttcaaccccacaaaaccgtggacaa
ttcactgcatcatcacagctacaattttttccttctcgggaattcctacccgtctcatct
gtaccctttattcaagggtgttcccaagggcatggtgcttctataagtattgccatgtca
aattcgttacctcttgtacaattaccattaacattcccaaacattgctaataactctatc
catttacaggggggatcgttgctgcctttatcgccaggtccccctcttgcttcgtcacaa
atgatacctaatcaaaatgctggtccagttgtctccaatcaacagcctggtggttcatat
tctggtttgattggttctcttatggctcaaggcttaatctctctgacaaaagaaacccct
gtgcaggactctgttggaattgagttcaatccagatgctcttaagtttcgtcatgagtct
gcaattgcgtatttgtataccgatctccctagacaatgtacaacttgtggccttcgattc
aagtgccaagaggagcataggagccatatggattggcatgtgaccaagaataggatgtct
aaaaaccgtaagcagaagccttcgcgcaagtggtttgtaagtaaaagtatgtggcttagt
ggtgctgaggcattgggaactgatgctgctcctgggttcttgcctattgagacagtagag
gaaaagaaggatgatgaagagatggctgtacctgctgatgagaatcagaatgtatgtgca
ctatgcggagagccttttgatgaattttacagtgatgaaacggaggaatggatgtataaa
ggagctgtctactcgaacgcacacaaaggaggcatggataggtcacagttaggtccaata
gttcatgctaaatgcaggccagagtctagtgttgtcactcccgaagattttggacaggat
gaagggggtaccactgaagagggtagtcaaagaaaacgaatgcgtaattaa
DBGET
integrated database retrieval system
