Quillaja saponaria (soapbark tree): O6P43_031442
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Entry
O6P43_031442 CDS
T09778
Name
(GenBank) DExH-box ATP-dependent RNA helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O6P43_031442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_031442
03041 Spliceosome [BR:
qsa03041
]
O6P43_031442
03009 Ribosome biogenesis [BR:
qsa03009
]
O6P43_031442
03016 Transfer RNA biogenesis [BR:
qsa03016
]
O6P43_031442
Enzymes [BR:
qsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
O6P43_031442
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
O6P43_031442
Spliceosome [BR:
qsa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
O6P43_031442
Complex C
U4/U6.U5 tri-SnRNP related factors
O6P43_031442
Ribosome biogenesis [BR:
qsa03009
]
Eukaryotic type
Pre-60S particles
Helicases
O6P43_031442
Transfer RNA biogenesis [BR:
qsa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
O6P43_031442
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
KAJ7946524
UniProt:
A0AAD7KUX9
LinkDB
All DBs
Position
13:complement(6888116..6897429)
Genome browser
AA seq
991 aa
AA seq
DB search
MGSLKRKFPEDPSVETRPSQRHQTENGSVLADEPVACVHDVSYPEGYVPPPQSSAQQNSE
PAKKYPFPLDPFQSEAISCLESGESVMVSAHTSAGKTVVALYAIAMSLQNKQRVIYTSPI
KALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYRGSEITREVAWIIF
DEVHYMRDRERGVVWEESIVMSPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDY
RPTPLQHYIFPSGCDGLYMVVDEKGKFREDSFQKALNALVPARESDKKKGNGKWQKGLVQ
GKVGDESDIFKMVKMIIHRQYDPVILFSFSKRECEFLAMQMTKMDLNGDDEKANIENIFW
SAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETF
SIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDERGICVLMVDEKMEP
STAKMMVKGAADSLNSAFHLSYNMLLNQMRCEDGDPENLLRNSFYQFQADRAIPDLQKQV
KAIEEERDSIVIEEEDSLKNYYNLLEQYRSLKEDVRDIVLSPRYCLPFLQPGRLVSIQCT
SNDEDLLPLFIEDQVTWGLVVNFERIKSASEDEASKKPEDANYTVDVLTRCVVRKDKLGK
KSVKIVPLKELGEPIVVSVPISQIDSLSSLRLIIPKDLLPLEARENTLKKLVETLSRFAE
KGLPLLDPEEDMKIQSSSYKKASRRIEALESLFQKHEIAKSPLIKQKLKVLQRKHKLTAK
IKSIKKTLRSSTALAFKDELKARRRVLRRLGYATGDNVVELKGKVACEISSADELTLTEL
MFNGVLKDLKVEEMVSLLSCFVWQEKVNDAAKPREELDLLFAQLQDTARRVAQLQLECKV
QIDVESFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIQAA
KSIGETELEAKFEVAVSKIKRDIVFAASLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgggatcattgaagagaaagtttcctgaagacccatcagtggaaacccgcccttcacag
aggcatcagactgagaatggttcagtgttggcagatgaacctgtagcctgcgtgcacgat
gtatcatacccagagggttatgttcctcctccccaatcttcagctcaacaaaattctgag
cctgcgaagaagtacccattccctcttgacccttttcagtctgaagctatcagttgcctt
gaaagcggggagtctgtcatggtgtctgcccacacttcagctggaaaaacagttgtagca
ttatatgctattgccatgtctttgcagaataagcagcgtgtcatatacacttcaccaatc
aaggcactgagcaaccaaaaatatagggagtttaaagaagagttttcagatgtcggtttg
atgactggagatgtcacaatcgatcccaatgcttcttgcctggtgatgactacagaaatc
tggcgtagcatgcagtacagagggtcagagattacgagagaggtggcttggatcatattt
gatgaggtacattacatgcgtgatcgtgaaagaggtgtagtgtgggaggagagcatagtt
atgtccccaaagaattctagatttgtattcctatcagcaactgtgcctaatgcaaaggaa
tttgccgattgggtggcaaaggtgcaccagcagccttgtcatattgtctatactgattat
cgaccaacaccccttcagcattacatttttccttctggatgtgatggtctatacatggtt
gtggatgaaaaggggaaattccgtgaggatagctttcagaaagctttaaatgcccttgtt
cctgctagggagagtgacaagaaaaaggggaatgggaagtggcaaaagggcttggtacaa
ggaaaagttggtgacgagagtgacattttcaagatggtgaaaatgatcattcatcgtcaa
tatgatcctgtgatactgttcagctttagcaaaagagagtgtgaatttcttgcaatgcag
atgacaaaaatggatctaaatggggatgatgaaaaggcaaacatagaaaatatcttttgg
agtgccatggacatgctttcagatgatgataagaagctacctcaggtttcaaacatgttg
cccctactgaaacgtggaataggtgtgcatcactctggcttgctaccgattctgaaggaa
gtgattgaaatcttatttcaagaagggctgattaagtgtttgtttgccacagagaccttc
agcataggtttgaacatgcctgcaaaaaccgttgtttttaccaatgtccgtaagtttgat
ggagacaagtttaggtggttatccagtggagagtatatacagatgagtggccgtgctggt
cgacgaggtattgatgaacgtggaatatgcgtccttatggtggatgagaagatggaaccg
tctactgctaaaatgatggttaaaggggctgctgatagtttaaacagtgcctttcactta
agctacaatatgcttttgaatcagatgcgctgcgaagatggtgatccggaaaatttgctt
cgtaattctttctatcagttccaagctgatcgtgccattcctgatcttcagaaacaagta
aaagctattgaagaagagagggattcaattgtaattgaagaagaagatagtttaaagaat
tattacaatctactggagcagtacaggagtttgaaggaggatgtccgtgacattgtgttg
tctccaagatattgtttaccatttttacaacctggcaggcttgtgtctatccaatgcact
tcaaatgatgaagatctcctacctttattcatcgaggaccaggtgacctgggggttggtt
gttaattttgaaaggattaagagtgcttccgaagatgaagcaagtaaaaaaccagaagat
gcaaattacactgttgatgttcttacaagatgtgtggtgaggaaagataaacttggcaaa
aaatctgttaaaattgtaccactgaaagagctcggagaacccattgttgtttctgttcct
atctctcagattgatagtttaagcagtcttcgtttgattataccaaaggatcttttgcca
ttggaggctcgagaaaatacattgaaaaagttagtggaaacactctctagatttgccgag
aaagggttgcccctcctagatccagaagaagacatgaagattcaaagcagctcatacaag
aaggcatcacgtagaatagaggcattagaaagtttgtttcagaagcatgaaattgcaaaa
tctccgcttataaagcaaaaactgaaagttttacaaagaaagcacaaactgacagcaaag
atcaagtcaattaagaaaactttacgctcgtccactgcattggcttttaaagatgaactt
aaagcaagaagaagagttcttcggaggctaggatatgctacaggtgacaatgttgtcgaa
ttgaaaggaaaggttgcttgtgaaatcagtagtgcagatgagttgacccttacagagctc
atgttcaatggtgttttgaaggacttaaaggtggaagagatggtgtctctcctctcttgt
tttgtatggcaggagaaagttaatgatgctgcaaagcctagggaagaacttgatttgctg
tttgcacaattgcaagatacagctcggagagttgcccaactacagctcgagtgcaaggtc
cagattgatgttgaaagttttgtaagttcatttagacctgatattatggaagctgtatat
gcatgggcaaaaggctcaaaattctatgagatcatggaaattacacaagtttttgaaggc
agcctaatcagggcaatcaggagactggaggaggttcttcagcagcttatacaagcagca
aagtctattggggaaactgaactagaagcaaaatttgaagtggctgtttccaagattaag
agggatattgtctttgcggcatccttgtatttgtag
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