Quillaja saponaria (soapbark tree): O6P43_031838
Help
Entry
O6P43_031838 CDS
T09778
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03020
RNA polymerase
qsa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
O6P43_031838
09124 Replication and repair
03420 Nucleotide excision repair
O6P43_031838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsa03021
]
O6P43_031838
03400 DNA repair and recombination proteins [BR:
qsa03400
]
O6P43_031838
Enzymes [BR:
qsa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
O6P43_031838
Transcription machinery [BR:
qsa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
O6P43_031838
DNA repair and recombination proteins [BR:
qsa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
O6P43_031838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-ProteinID:
KAJ7946980
UniProt:
A0AAD7P9R6
LinkDB
All DBs
Position
13
Genome browser
AA seq
1191 aa
AA seq
DB search
MDEDHDYDPQLNEEDDDEDITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
SADIEIRPESQHNPGHQSDFAETIYKICFGQIYLSKPMMTESDGETATLFPKAARLRNLT
YSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST
MFVRMLSRTSAKGGSSGQYIKATLPYIRQEIPIIIVFRALGFVADKDILEHICYDFSDTQ
MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGTTEF
CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
GYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVN
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRETPEEGGWHDLV
SSGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSETYTHCEIHPSLILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYREEEKKMGTLVKEDFGRPD
RANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDAQGQASRYTRRDHSIS
LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP
WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH
KCGYQMRGFETMYNGHTGRRLSSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE
GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE
CRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEVKASKDQKKRGA
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaccacgactatgatccacaactgaacgaagaagatgatgatgaggatatt
acccaagaagacgcatgggctgtgatctctgcgtattttgaggaaaagggtttggtccgt
caacagctagactcattcgacgagttcatacaaaacacgatgcaagaaattgtggatgag
tctgcagatattgagattagacctgaatcacagcacaatcccggtcaccagtcggatttc
gctgagactatctacaagatctgctttggtcagatttatttgagtaagcccatgatgact
gagtctgatggagagactgcaacattatttcctaaggctgcaaggttgagaaatctaact
tattctgcccctttgtacgtggatgtctcgaagagagttataaagaaggggcatgatggt
gaagaggttactgagactcaggatttcaccaaagttttcatcgggaaggttcctataatg
ctccgatcaagttactgcacattgtatcaaaattcagagaaggacttgacggagcttggg
gaatgtccatatgatcaaggtggctatttcattattaatgggagtgaaaaggttctgatt
gctcaggagaagatgagcactaatcatgtatatgtgtttaagaagaggcagcctaacaaa
tatgcctatgtggcggaagtacggtccatggctgagtcccagaacagaccacccagtacc
atgtttgtgcgcatgctctctcgaactagtgcaaaagggggttcttcgggacaatatatc
aaggctacacttccatatattcgacaagaaatccccattattattgtgtttcgagctttg
gggtttgttgctgacaaagacatactggaacatatatgttacgacttttctgacactcaa
atgatggagttgcttcgtccctcgctagaagaagcatttgttattcaaaatcaacaggtt
gcgctagactacattggaaaaagaggagcaactgttggtgttactaaggagaagagaatt
aagtatgcaaaggagatccttcaaaaggaaatgcttcctcatgttggtactactgaattt
tgcgagacaaagaaagcttactactttggatatatcattcaccggttgcttctatgtgcg
cttggccggagggctgaagatgatcgcgatcattatggcaacaaaaggctggacctggct
ggtcctttacttggaggcctctttagaatgctattcagaaagctaactagggatgtcaga
ggttatgtacagaagtgtgttgataatggaaaagatgttaacctgcaatttgctatcaaa
gcaaaaactataacaagtggtcttaagtactcacttgctactgggaattggggacaagca
aatgcagctggtacaagagccggagtgtcacaggtcttgaatcgtttaacctatgcatcc
actttgtcacacttgcggagactgaattctcccatagggcgtgaagggaaattggctaag
ccacggcagttgcacaattcacaatgggggatgatgtgccctgcagaaacacctgaagga
caagcatgtggattggtgaagaatcttgctttgatggtatacataacagttggatcagca
gcatatcctattttggagtttttggaagaatggggtacagaaaattttgaggaaatttct
cctgcagtcattccccaagctacaaaaatttttgtcaatggttgttgggttggtatccat
cgtgatcctgatatgttagtaagaacattgagacggctgaggaggcgggttgatgttaat
actgaagttggggttgttagagatatccgtctgaaagaattgcgcatatatactgattat
ggccgttgcagtcgtccattattcatagtggagaaacaaaggcttcttataaagaagaag
gatattcatgcactgcaacagagagaaactcctgaagagggtggctggcatgatcttgtg
tcaagtggatttatagaatatattgatacagaagaagaagagacaactatgatttccatg
accattaatgaccttgtacaagcaaggctcaatccagaggaggcttattctgaaacttac
actcattgtgagattcacccatcattgattttgggtgtatgtgcttcaattatacccttt
cctgatcataatcagtccccacgtaatacatatcagtctgcaatgggtaaacaagcaatg
gggatatacgtcaccaattaccaatttcggatggatacattggcctatgtactgtattat
ccccaaaagcctcttgtcactacgagagcaatggaacatctccacttccggcaacttcct
gctggaattaatgccattgtggccattgcctgttattctgggtataatcaagaagattct
gtcatcatgaatcaatcatccatagaccgtggattctttcgatcactattcttccgttca
taccgtgaggaggagaaaaagatgggaacgctagtcaaagaagattttggccgtccagac
agagctaataccatgggtatgaggcatggctcctacgataagctggatgatgatggtctt
gcaccacctggtacacgagtttcgggtgaggatgttatcattggaaagactactcccata
gctcaggatgatgctcaaggacaagcttctcgttatactcggcgtgatcacagtattagc
ttacgccatagtgagacaggaatggttgatcaagttctactgacaacaaatgccgatggt
ctgaggtttgtgaaagtaagggttagatctgttagaataccacagattggtgacaagttt
agtagcaggcatgggcaaaagggtactgttggcatgacttacacacaggaagacatgccg
tggaccgtggaaggcatcacccctgatatcattgtgaatccacatgctattccatctcga
atgacaattggccagcttattgagtgtatcatgggaaaggttgctgcccacatgggaaaa
gaaggagatgctactccttttacagatgttaccgtggacaatatcagcaaagctcttcac
aaatgtgggtatcagatgcgtgggtttgagaccatgtacaatggtcacaccggccgccgc
ctttcttctatgatattccttggccccacttactaccaacgattgaagcacatggttgat
gacaagattcattctcgtgggcgtggtcctgtacagatcctgacaaggcaacctgctgag
ggacggtcccgtgatggaggtctccgatttggagagatggaacgggattgcatgatagcc
catggtgctgctcacttcctaaaggaaaggctgtttgatcaaagtgatgcatacagagtc
catgtatgtgaacgctgtggattgatagccatcgcaaatctcaagaaaaattcttttgag
tgcagaggatgcaagaacaaaaccgacatagttcaggtttacattccttatgcctgtaag
ctgctcttccaagagctcatggctatggctatagctccaagaatgctcactaaggaagta
aaggcttcgaaagaccaaaagaagagaggagcctga
DBGET
integrated database retrieval system
