KEGG   Qipengyuania spongiae: L1F33_01380
Entry
L1F33_01380       CDS       T08950                                 
Name
(GenBank) excinuclease ABC subunit UvrA
  KO
K03701  excinuclease ABC subunit A
Organism
qsp  Qipengyuania spongiae
Pathway
qsp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:qsp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    L1F33_01380
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:qsp03400]
    L1F33_01380
DNA repair and recombination proteins [BR:qsp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     L1F33_01380
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      L1F33_01380
SSDB
Motif
Pfam: ABC_tran UvrA_DNA-bind AAA_21 nSTAND1 DnaJ_CXXCXGXG AAA_16 AAA_29 RsgA_GTPase DUF4350
Other DBs
NCBI-ProteinID: UVI39645
LinkDB
Position
complement(262664..265324)
AA seq 886 aa
MKSKDIHATTPATDHGHTGPPSCVQVRGARQNNLKNIDVDVPRDAFVVFTGISGSGKSSL
AFGTLYAEAQRRYLESVAPYARRLIDQAGVPEVDAIDGLPPAVALQQQRGSANARSSVGS
VTTLSSLVRMLYSRVGEYPRHQSMLYAEDFSPNTVAGACPTCHGIGRVYDATEETMVPDD
SLTIRDRAIAAWPTAWHGQNLRDILVSLGYDVDTPWRDLPKKDRDWILFTEEAPTVPVYA
GLTPEQTRTALKGGMEPSYQGTFTGARRYVLETFANTKSALMKKRVSQYIIGRDCPTCDG
KRLKREALSVKFAGLDIAEFGDLTALKLRDLLTPVAHGEYGGAAAVPKGHVLGKAARDAA
VERRVAAGGSAHKAAPDVRRTPNLSDEKRVAAQRLACELIERLEPLIDLGLGYISLDRST
PTLSSGELQRLRLATQLSSQLFGVVYVLDEPSAGLHPADGEALITILERLKAAGNSLFVV
EHDLDVIRRAEWLVDVGPGAGAKGGEVLYSGPIGGLADVETSITRRYLFADPLRSERTPR
DPKAWLRLEGIRRNNLHGLDVAFPIGCFTAVTGVSGSGKSSLVSQALPELVTEHLGGSPV
AEEEDVDPLLDVAQNDTEGRIVAGMEHVRRLVRVDQKPIGRTPRSNLATYSGMFDHVRRI
FADTPLARRRHYSPGRFSFNVAQGRCPVCEGEGYVMVELLFLPSVFAPCSTCHGSRYNPQ
TLEVEWNGRNIAQVLELTVDDACDFFAGEASVMRSLDVLREIGLGYLRLGQPATELSGGE
AQRIKLATELQRAQRGNTIYILDEPTSGLHPSDSDRLMQHLQGLVDAGNTVVVVEHDMRA
ITQVDWIIDLGPGAGEDGGRIVASGVPDVVAEAEGSLTARYLKAAL
NT seq 2661 nt   +upstreamnt  +downstreamnt
atgaagagcaaggatattcacgcgacgacgccggccaccgatcatggtcatacggggccg
ccctcttgcgtgcaggttcgcggcgcgcgccagaataacctcaagaatattgacgtcgat
gtaccgcgcgacgccttcgtggtattcaccggcatatcgggctcgggcaagtcatcgctc
gcgttcggcaccctctatgccgaagcccagcggcgttatctggagtcggttgcgccctat
gcccgtcgcctgatcgaccaggccggggttccggaggtcgacgcgatcgacggtttgccg
cctgcggtcgcgttgcagcagcagcgcggctcggccaacgcgcgatcctcggtcggcagc
gtgactacgctctccagcctggtgcggatgctctattcgcgcgtcggcgaatatccgcgc
catcaatccatgctctatgcggaggatttctcccccaacacggtcgccggcgcctgcccg
acctgtcacggcatcgggcgcgtctatgacgcgaccgaagaaacgatggtgcctgacgac
agcctcaccattcgcgaccgggcgatcgccgcctggccgaccgcctggcatggccagaac
ctgcgcgatatcctcgtttcgctcggctatgacgtcgatacgccgtggcgagacctgccg
aaaaaggatcgcgactggatcctcttcactgaagaggcgccgacggtgccggtctatgcg
ggcctgacgcccgaacagacgcggacggcgctcaagggcggcatggagccgagctaccag
ggcaccttcaccggcgcgcgccgctatgtgctggaaaccttcgccaacactaaaagcgcg
ctgatgaagaagcgcgtctcgcaatatatcatcggacgcgattgcccgacctgcgacggc
aagcgcctgaagcgcgaagccctgtccgtgaagttcgcgggccttgacatcgccgagttc
ggcgacctgacggcgttgaaactccgggacttgctcacgcccgtcgcgcatggcgaatac
gggggcgccgcggcggtcccgaagggccatgtcctcggcaaggcggcccgcgatgcggcg
gtcgaacggcgagtcgcggcaggaggttcggcgcacaaggctgcgcccgacgtgcgccgc
acgcccaacctttccgatgaaaagcgggtcgccgcccaacgccttgcctgcgaattgatc
gaacggctagagccgctgatcgatcttggccttggctatatttcgctcgaccgcagcacg
ccgacgctctcctccggagagctgcagcgcttgcggcttgccacgcaattgtcgtcacag
ctttttggcgtggtctatgtgcttgacgagccttcggcagggttgcacccggcagatggc
gaagccttgatcaccatccttgagcgtctcaaggcggcgggcaactccctgttcgtcgtc
gaacatgatctcgacgtgatccgccgcgcggaatggctcgtcgatgtcgggccaggagcc
ggggcaaagggcggtgaagtcctctacagcgggccgattggagggcttgccgacgtcgag
acttcgatcacccgccgctacctgttcgcagatccgctccgcagtgagcgcacaccgcgc
gaccccaaggcatggctacgcctggaagggatcaggcgtaacaatctccatggtctcgac
gtcgcgtttcccatcggctgcttcaccgctgtcaccggcgtttcgggatcgggcaaatcc
agtcttgtcagtcaggcgctgcccgagctcgtcacggaacacctcggcggctcccccgtg
gccgaggaggaggatgtcgatccgctgctcgatgttgcgcagaacgacaccgaaggacgc
attgtcgcaggcatggagcatgttcgtaggctggtgcgggtcgatcagaaaccgatcggc
cgcacgccgcgctcgaacctagccacctacagcggcatgttcgaccatgtgcgacggatc
ttcgctgatacgccgctcgcccgccggcggcactacagcccgggaaggttctcgttcaac
gtcgcgcaaggccgctgccctgtgtgcgagggcgagggatacgtcatggtggagctgctg
ttcctgccgagcgtttttgccccgtgctcgacctgtcatggctctcgctacaacccgcaa
acgctcgaagtcgaatggaacgggcgcaatatcgcccaggtgctcgaactgacggtcgac
gatgcgtgcgatttcttcgctggcgaggcatctgtgatgcgctccctcgatgtgttgcgg
gagatcggtcttggctatctgaggctcggtcagccggcgaccgagctgtctgggggggag
gcgcagcgcatcaagctggcgactgaactgcaacgcgctcaacgcggcaacaccatctac
atcctcgacgagccgacttcggggcttcatccctccgacagcgaccggctgatgcaacac
ctgcagggcctcgtagacgccggcaataccgtcgtggtcgtcgaacatgacatgcgcgcc
atcacacaggtggactggatcatcgacctgggaccgggggccggggaagatgggggccgt
atcgttgccagcggcgtccctgacgtcgttgcggaagcggaaggcagtctcaccgcccgc
tatctcaaggcggcgctgtag

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