Qipengyuania spongiae: L1F33_07705
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Entry
L1F33_07705 CDS
T08950
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
qsp
Qipengyuania spongiae
Pathway
qsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L1F33_07705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsp03019
]
L1F33_07705
Enzymes [BR:
qsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L1F33_07705
Messenger RNA biogenesis [BR:
qsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L1F33_07705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UVI38162
LinkDB
All DBs
Position
1549544..1550977
Genome browser
AA seq
477 aa
AA seq
DB search
MTQSSEHTFENLGLSQPVLQALDLKGYSTPTPIQAQAIPSVLEGRDLLGIAQTGTGKTAA
FMLPSIDNLREADRQTPFKSCRMLVLAPTRELAGQIADSAKDYGALAGLKVQSIVGGTSV
NKDRNKLHRGTDILVATPGRLLDLIDQKAFQLNGVEILVLDEADQMLDLGFIHALRRISQ
LVPAERQTLFFSATMPAQIKELVGKYCNNPATVSVTPAATTAERIDQYLFMVQQDEKQTL
LEMILKGQHDVPGKFERILVFARTKHGCDRVVKNLARAGIAANAIHGNKSQPQRQRALDE
FKRGKTPVLVATDVAARGIDIPGVSHVINYELPNVPDQYVHRIGRTARAGRDGVAIAFCA
EDERDYLKDIRKNTDAEFERLPLPDNFRAVVEGVGPTKRPPPGQKMKQPRVTPTGDAARR
AKPKAKHPARKGKPQGAGERTGERGGERAGGQGRPGGRNRNRNRSRGGGGGGARGQA
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaatcttcagaacatactttcgagaatctggggctgtcccagcccgttctccag
gccctcgacctcaagggctattccaccccgacgccgatccaggcgcaggccattccttcc
gtgctggaggggcgcgacctgcttggcatcgcgcagaccggcaccggcaagacggctgcc
ttcatgctgcccagcatcgacaatctgcgcgaggccgacaggcagacgccgttcaagtcc
tgccggatgctggtgctcgccccgacgcgcgaacttgcagggcagatcgccgacagcgcc
aaggattacggcgcgctcgccggattgaaggtgcagtcgatcgtcggcggcacctcggtc
aacaaggaccgcaacaagctgcatcgcggcaccgacatcctcgtcgcgacgccgggccgc
ctgctcgacctgatcgaccagaaggcgttccagctgaacggggtcgagatcctcgtgctg
gacgaggcggaccagatgctcgacctcggcttcatccacgcgctgcgacggatcagccag
ctcgtgccggccgagcgccagacgctgttcttctccgccaccatgcccgcgcagatcaag
gaactggtgggcaagtactgcaacaacccggcgaccgtttccgtcactccggcggcgacc
acggccgagcggatcgaccagtatctcttcatggtccagcaggacgagaagcagaccctg
ctcgagatgatcctcaagggtcagcacgatgtgccgggcaagtttgagcgcatcctggta
ttcgcgcggaccaagcatggctgcgaccgggtggtgaagaacctcgcccgcgccgggatc
gccgccaatgcgatccacggcaacaagagccagccgcagcgccagcgcgcgctcgatgag
ttcaagcgcggcaagacgccggtgctggtggcgactgatgtcgcggcgcgcgggatcgac
attcccggcgtcagtcacgtcatcaattacgagctgccgaacgtgcccgaccagtacgtc
catcgcatcggccgcaccgcgcgcgccggacgtgacggggtcgccatcgccttttgtgcg
gaggacgagcgcgattacctcaaggacatccgcaagaacaccgatgcggagttcgagcgc
ctgccgctgccggacaatttccgcgccgtggtggaaggcgtgggccccaccaagcgcccg
cctccgggtcagaagatgaagcagccgcgcgtcacgccgacaggcgatgccgcacggcgc
gccaagcccaaggccaagcatcccgcgcgcaagggcaagccgcaaggtgccggagagcgc
accggggagcgtggtggagaacgcgcgggcgggcagggccggcccggcgggcgcaaccgg
aaccgcaaccgcagtcgtggtggcggcggcggaggggcgcgcggtcaggcctga
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