Quercus suber (cork oak): 111985419
Help
Entry
111985419 CDS
T05868
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03022
Basal transcription factors
qsu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111985419
09124 Replication and repair
03420 Nucleotide excision repair
111985419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsu03021
]
111985419
03036 Chromosome and associated proteins [BR:
qsu03036
]
111985419
03400 DNA repair and recombination proteins [BR:
qsu03400
]
111985419
Enzymes [BR:
qsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111985419
Transcription machinery [BR:
qsu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
111985419
Chromosome and associated proteins [BR:
qsu03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
111985419
DNA repair and recombination proteins [BR:
qsu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
111985419
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
AAA_11
NAMPT_N
AAA_19
LRV
Motif
Other DBs
NCBI-GeneID:
111985419
NCBI-ProteinID:
XP_023872832
LinkDB
All DBs
Position
Unknown
AA seq
758 aa
AA seq
DB search
MKFQIEDVTVYFPYDHIYPEQYAYMVELKRALDARGHCLLEMPTGTGKTIALLSLITSYT
LSKPNNPVKLIYCTRTVHEMEKTLAELKLLHAYQTTHIGDRARILAVGLSSRKNLCVNSR
VLAAENRDSVDASCRRLTASWVRAAAAANPNLPTCEFFEEYEKAGSNAVLPPGVYTLQDL
RAYGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGYISKEMQKESVVVFDEAHNID
NVCIEALSVSVRRQTLEGARRNLNKMRQEIEKFKATDAGRLRAEYNRLVEGLAQRGNLPF
TDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLEGRLETDNVEKEGPVGFVAS
INTHAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP
FDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMASVVPDGIVCFFV
SYSYMDGIVNSWNENGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAIFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
LRKMAQPYDKAGGSGRKTLLSQEDVEKMSDGILNEMQY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttcaaatagaagacgtaacggtgtactttccgtacgatcacatatacccagaa
caatatgcgtacatggttgaactgaagcgagctctagatgccagagggcactgcctcctc
gagatgcccactggcacaggcaaaaccatcgctcttctttctctcatcaccagctacact
ctctctaaacccaacaaccctgtcaagctcatctactgtacccgcactgtccatgagatg
gagaagacccttgcagagctcaagctcctccatgcttaccagactactcacatcggggac
cgtgctagaatccttgctgttgggctctcttcccgcaagaacctatgtgttaattcgcgt
gttttggctgcggagaatcgggactcagttgatgctagttgccggagactgacggccagt
tgggtcagggcggcagcagcggcaaaccccaatttgcccacatgtgagttttttgaagag
tatgagaaggcagggtctaatgcagtgttgcctcccggggtttataccttgcaggatctg
agggcatacgggaaggagaaagggtggtgtccatacttcttggcacgacatatggtgcaa
tttgcaaatgtggtggtttatagttatcaatatttgcttgatcccaaggtggctgggtat
atatccaaggaaatgcagaaggaatctgttgtggtgtttgatgaggcacataatattgat
aatgtgtgtattgaagctcttagtgttagtgtgagaaggcagacacttgaaggggccaga
aggaatctcaataaaatgcgtcaggagattgagaagtttaaggccacagatgctggtaga
ctgcgtgcagagtacaatcggcttgttgagggtttggcacaaagaggaaacttacctttc
acagacaactggctctccaatcctgccttacctgatgatattctgaaggaggccgtgcct
ggaaatatccgccgagcagaacattttctgcatgtcttacgtagattggtccaatatctg
gaggggcggctggaaactgataacgttgagaaggaggggcctgttggctttgttgcatct
attaatactcatgctggaattgaccaaaaaacactgaagttttgttatgatcgcctacat
tcactgatgttaacactagaaatcactgacactgatgaattcttacacatccaaacaata
tgtgacttcgcaacacttgtagggacatacactcgtggtttttcaattataattgaacct
tttgatgagagaatgccccatattcctgaccctgtgctgcagcttagttgccacgatgct
tctcttgccataaagcccgtatttgatcgattccagtcagttgtcattacatctggaact
ctgagtccaattgatctctacccccgtctacttaatttccatccagttgttagtcgaagt
tttacgatgtccttaacaagagattgcatatgcccaatggttctcactcgtggaagtgat
cagcttcctgtcagtaccaaatttgacatgagaagtgatcttggtgttgtacgaaattat
gggaggcttttactggagatggcatctgttgttccagatgggattgtatgtttctttgtt
agttactcatatatggatggcatagtgaacagttggaatgaaaatggaattttaaaggaa
ataatgcagcataagcttgtcttcatcgagactcaggatgttgtagaaactactttggct
cttgacaactatcgcaaggcctgtgattgtgggaggggtgccatctttttctctgttgcc
aggggaaaagttgctgagggtatagacttcgatcgacattatggtagactggtcattatg
tttggtgttccttttcagtacacattgagcaagattttgcttgcccggttggaatatcta
cgggatacctttcagattaaggaaggagattttctgacttttgatgccttgagacaggct
gctcaatgtgtgggccgagtgatccggtcaaaggctgattatgggatgatgatctttgct
gacaaaaggtatagccgtcatgacaagcgctctaaattgcctgggtggatactgtcacat
ttacgtgatgcacacctgaatttgagcacagacatggctctgcatatagcacgggagttc
cttaggaagatggctcaaccatatgataaggctggtggcagtggtaggaaaacccttttg
tcccaagaagatgtggagaagatgagcgatggcatcttgaacgaaatgcagtattga
DBGET
integrated database retrieval system
