Quercus suber (cork oak): 111986552
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Entry
111986552 CDS
T05868
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111986552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
111986552
Enzymes [BR:
qsu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
111986552
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111986552
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
111986552
NCBI-ProteinID:
XP_023873984
LinkDB
All DBs
Position
Unknown
AA seq
724 aa
AA seq
DB search
MKKLYPITLSRALSRALSSSSSSSSSTSSSAQSIAFPLKHVTKGNFESALAELRRHVAAA
DFVAIDLEMSGVTSAPWRESFEFDRSDVRYLKVKDSAEKFAVVQFGVCPFRWDSSKLSFI
AHPHNFYVFPRQEVPIDGPSYEFLWQTTSIEFLAKYQFDFNACIREGISYLSRGQEEEAL
RRLSMAYEDELSDTWCNLKEVRDIPINRMADVLFSERIKNTFSKWRDGLLRDGGSQLQLN
SNDSKQQFQTVFFKMRPALSLAGFTSHQFRLIQMVINKHFKDLSYIRVNGDDLCSQHLVV
YTESKDDRGMLMKEVKDENRRVAEMKIQAAIGFRHVIDLLSAEKKLIVGHNCFLDIAHVY
SKFVGPLPLAAEEFVSSVNKYFPHIVDTKILLNANHVLQQRMKKSSTSLSSAFALLCPQI
AVSSKSTGLTFQQCVQVEVQVDDMRSSNWNSGAKHEAGYDAFMTGCIFVQACSYLGIDFK
LHSPSENLAHNEKLCKHVNHLYLSWINGDIIDLSTGNKVAELFGTNYFKKKYLNILFENI
VLIWGFPSKLKAREIRECVSKVFGPTSVTSVYHLDETAVFVQFSKPEFVSDFLLLKETLE
KSDGPISVLHPLAKLLEGGNTHAGNYETYKEICSSPISKVLFANQAEAVGIKWKGEAVEP
KIAVESKERSSFWEENAVNNSTRSSEKSKQGKVHNAKKDMLGGNYEIIDSLYAAEVNQIR
TNNL
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagctctatcccattactctctcacgtgcgctctcacgtgccctatcttcttct
tcttcttcttcatcttcaacctcaagctcagcccaatcgattgcgtttcctctgaagcac
gtgacgaaggggaacttcgagtcggctctagcggagctccggcgtcacgtggcggcggca
gacttcgtcgccattgacttggagatgagcggcgtcaccagcgccccctggcgcgagtcc
ttcgagttcgaccgctccgacgtccgctacctcaaagttaaggactccgccgagaagttc
gccgtcgttcaattcggcgtctgtccctttcgctgggactcttccaagctctccttcatc
gctcacccgcacaatttctatgtctttccgcgtcaagaggttccgattgatggcccctct
tacgagtttctctggcagacaacatcaattgaattcttagccaaatatcagtttgatttc
aatgcctgcatacgagaaggaatatcttatttatccagaggacaagaagaggaagcatta
agacgtttgagtatggcatacgaggatgagttatcagatacatggtgcaacttgaaagaa
gtcagagacattccaataaaccgcatggctgacgttctgttttctgaacgaatcaagaat
acattcagcaaatggcgcgatggattattacgggatggagggtcccaacttcaattgaac
tcaaatgactcaaagcaacaatttcaaactgttttctttaaaatgcgtccagctcttagt
ctggccggctttacttctcatcagtttaggttaattcaaatggtcattaacaagcacttc
aaagatctttcttatattcgtgtgaatggtgatgatttatgttcacaacatttagtagtg
tatacggaatcgaaggatgacaggggcatgcttatgaaagaggtgaaagatgagaatcgc
agagtagcagagatgaaaatccaagctgcaattgggtttcgccatgttattgacctcctt
tcagcggagaagaagttaattgttggtcataattgcttcctggatattgcacatgtatac
agcaaattcgtaggtcctcttcctttggctgccgaagaatttgtctcctctgttaacaag
tactttccacatatcgttgacaccaaaatactcttgaatgccaatcatgtactccaacaa
cgtatgaagaagtccagcacatcactatcctcagcatttgctttgttgtgtccacaaatt
gctgttagttctaaaagcacggggcttacttttcagcaatgtgtgcaagtggaggttcaa
gtggatgatatgaggtcctccaactggaactctggagccaagcatgaagctgggtatgat
gcttttatgacaggatgtatctttgtgcaggcctgcagttatctaggcattgattttaaa
ctccattcgccctctgaaaatttagctcacaatgaaaagctctgtaagcatgtcaaccat
ctatatctcagttggattaatggagacatcattgatttaagtactggtaataaggttgca
gagttgtttggaactaattacttcaaaaagaagtacctaaatattttgtttgagaacatt
gttttaatctggggattcccatccaaacttaaggcaagagagataagagaatgcgtctcg
aaagtctttggcccgacctctgtaacttctgtttaccacttagatgaaactgctgtgttt
gttcagttcagcaagccagaatttgtctctgattttctgcttctaaaggaaactttagag
aaaagtgatggtccaatctcagttttgcaccctcttgcaaaacttttggaaggtggaaac
actcatgctgggaattatgaaacttataaagagatttgcagctcacccatttcgaaagtc
ttgtttgccaatcaggcagaggcggttggtattaaatggaagggggaagctgtggaaccc
aagatagcagtggagagcaaagaacgttcaagtttctgggaagaaaatgcagtaaacaat
tctactagatcttctgaaaagtcaaagcaagggaaggtacacaatgcgaaaaaagatatg
ttgggcggcaattatgagatcatagattctttatatgctgccgaagtcaatcaaattaga
acaaataacttgtga
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