Quercus suber (cork oak): 111987468
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Entry
111987468 CDS
T05868
Name
(RefSeq) probable RNA helicase SDE3 isoform X1
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
qsu
Quercus suber (cork oak)
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
111987468
03036 Chromosome and associated proteins [BR:
qsu03036
]
111987468
Enzymes [BR:
qsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
111987468
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
111987468
Chromosome and associated proteins [BR:
qsu03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
111987468
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
AAA_22
DEAD
Helicase_RecD
PhoH
AAA_16
Mov-10_helical
SLFN-g3_helicase
Cep192_D4
SNF2-rel_dom
AAA
ATPase_2
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
111987468
NCBI-ProteinID:
XP_023874955
LinkDB
All DBs
Position
Unknown
AA seq
879 aa
AA seq
DB search
MGDFGGNWDEEFSTVGDKGEIGFLDFGDDQSVCSYNPDQEGPAVISVPFPMSGGNPQSIV
VGETAAESITIKNTTSEPVTLWSVSIFASTPENSFKLSLMKPPSGNETSRGYVDFFTLED
RMIQPRETLTVWISCKPKAIGLHTSVMYFDVESTRIERVVFLMCDDNISQSLASRRPYSR
DRRKKQVVTNGTFVMGVRPPKKTDKVFKNRLPRYDIPREVRELLEKKQIPNAVEEGLSIE
NYTNFFRHLVVMEEIQLEEDMRGHDMESVTMRKRGAHFLSLVVPGLAERRPSLVQGDDIF
ARLASEDENETTSYQGFIHRVEADEVYLKFAKDFHSWHRDGNLYNIRFKYNRVNMRRLYQ
AIEAAARLEIEFLFPSEAPNMRLIETTPLVPISCHLNPEQMCAVEMILGCKGAPPYVIHG
PPGTGKTMTLVEAILQLYTTRKNARILVCAPSNSAADHILEKLLSEKAVKVHDNEIFRLN
APTRTYEDVTPNIIRFCFFDEHIFKCPPPNALMRYKIVISTYMSASLLYAEDVKRGHFSH
IFLDEAGQASEPETMIPIASLCQRKTVVVLAGDPMQLGPVIYSKEAETYGLGKSYLERLS
ESDIYYNGEENYVTKLVRNYRCHPEILYLPSMLFYNSELIACKDDKSDFLDGVKLLPNRD
FPVLFFGIQGCDEREGNNPSWFNRIEASKVVEVIGRLTATGNLSEEDIGVITPYRQQVLK
LKNTLEGLDMTDIKVGSVEQFQGQEKKVIIISTVRSTIKHNEFDRTYCLGFLSNPRRFNV
AVTRAISLLVIIGNPHIINKDPHWNMLLWHCADNNSYQGCALPEKEEFVDEDPTQENYLN
NDEENPLPSKEVECDQESWQEEYPKPNKDEDEWSDGWKD
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgggtgactttggtggtaactgggatgaggaattctctactgttggagacaaaggagaa
attgggtttcttgattttggggacgatcaatctgtgtgtagttacaacccagatcaagag
ggtcctgctgttatttctgtcccatttcctatgtcagggggaaacccacaatcaatagtc
gtaggagaaaccgctgcagagtcgattaccatcaagaatactactagtgaaccagtgact
ctctggtctgtttcaatttttgcctcaactcctgagaattcgttcaaactttctctgatg
aagccgccatcaggaaatgaaactagcagaggctatgtagactttttcaccttggaggac
aggatgattcagccaagagagaccttgactgtatggatctcttgcaaaccaaaggcaatt
ggtttgcacacttcagttatgtattttgatgttgagagtacgaggatagaacgagtggtg
ttccttatgtgtgatgataacatatcacagtctttggcttctagaaggccttattcaagg
gacagaagaaagaagcaagttgtgactaatggtacatttgttatgggtgtacgtcctccg
aagaaaacggacaaagttttcaagaacagacttcctcgatatgacattccaagggaagtc
agggaattgcttgagaaaaagcagatccctaatgctgtcgaagaaggcctttcaattgaa
aattatactaacttcttcaggcatttagtagtcatggaagaaatacaattggaggaagac
atgaggggtcatgacatggaatctgtaactatgaggaagaggggagctcattttttgtcc
cttgtggttccaggtcttgctgagagaaggccttcacttgtccaaggagatgatattttt
gccaggcttgcctctgaagatgaaaatgagactacttcatatcagggttttatccaccgt
gttgaagctgatgaagtttacctgaagtttgctaaagactttcactcgtggcatagagat
gggaatctctataatatacggttcaaatataatcgagtcaacatgagaaggttatatcaa
gccattgaagctgcagcaaggttagagatagagttcctatttccatctgaggcccctaac
atgaggctgattgaaaccacgccgctggtgcctatatcatgtcatcttaatcctgagcag
atgtgtgcagttgagatgatccttggctgcaaaggagcaccgccttatgtgattcatggg
cctccgggtactggtaagactatgactttagtggaagcaatcctccagctctacacaact
cgaaagaatgctcggattcttgtgtgtgccccttcaaatagtgcagcagaccacattcta
gagaagctcctcagtgaaaaggctgtaaaggttcacgataatgaaatattcaggctcaat
gcacctacccgtacctatgaggatgtaacacctaatattatccgcttttgcttctttgat
gagcatatcttcaagtgtcctccaccgaatgctctcatgcgatataagatcgtcatatcg
acttatatgagtgcctctcttctttatgcagaagatgtcaagcgaggccacttctctcat
attttcttggatgaggctggccaagcttcagagccagaaaccatgattcctatagccagt
ctctgtcaaagaaagacagttgttgttcttgctggagaccccatgcagttaggtccagta
atatactctaaagaggcagaaacttacggattggggaaatcgtacttggaaagattgtct
gaatctgacatttactataatggggaggaaaattatgttacaaaattggtgcggaactac
aggtgtcacccagaaattctttatctcccttcaatgctgttctataatagcgaattaatt
gcatgtaaagatgacaaaagtgacttcttggatggggtgaaactccttcctaacagggat
tttcctgttcttttctttggtatccaaggttgtgatgagagggaaggaaataatccatca
tggtttaaccgaatcgaggcaagcaaggtagtagaggtcatcgggcgactgactgctact
ggaaatctgagtgaggaagatattggggtgataacaccttatcggcagcaagtgctaaaa
ctcaagaacacccttgaaggtttggatatgacagatatcaaggttggaagtgttgaacaa
tttcaaggtcaagagaagaaagtaattattatatctactgtccgttcaacaatcaaacac
aatgaatttgaccgaacgtattgtttgggatttttgagcaatccaagaaggtttaatgtg
gctgtaacccgtgccatatccttgttggtcataatcgggaatccacacatcatcaacaag
gacccccactggaacatgcttttatggcattgcgcagacaataactcatatcagggttgt
gctctccccgaaaaggaggagtttgttgatgaggatcccacacaggaaaattacttgaac
aatgatgaagaaaaccctctaccctctaaagaagttgaatgtgatcaagagtcttggcaa
gaagaatatcctaaacctaataaggatgaagatgaatggtctgatggttggaaggattaa
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