Quercus suber (cork oak): 111988552
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Entry
111988552 CDS
T05868
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111988552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsu03041
]
111988552
Enzymes [BR:
qsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111988552
Spliceosome [BR:
qsu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
111988552
Complex C
U5 SnRNP specific factors
111988552
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
DUF1127
Motif
Other DBs
NCBI-GeneID:
111988552
NCBI-ProteinID:
XP_023876116
LinkDB
All DBs
Position
Unknown
AA seq
2179 aa
AA seq
DB search
MAHLGGGAEAHARHKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAY
RGKPPELDEKLKKSKKKKERDPLAEPPPSRQSKRRRLQEESVLNSSEEGVYQPKTKETRA
AYEAMLSVIQQQLGGQPLSIVSGAADEILAVLKNETLKNPDKKKEIEKLLNSVPNAVFDQ
LVSIGRLITDYQDGGGDVAGTAAAAANGDDGLDDDVGVAVEFEENEEEDEESDLDMVQED
EEEEDDVVEASNSGAMQMGGGIDDDDDMQEANGGMNLNVLSIGAYWLQGKISEAFQKQID
PQQCQILAEDVLKILAEGDDREVESKLLLLLQFDKFSLIKILLRNRLKIVWCTRLARAED
EEQKKKIEEEMMGLGPELVAIVDQLHATRATAKERQKNLEKSIREEARRLKDESGGDGDK
GRIGIVDRDADSVWGQRQLLDLDSIAFEQGGRLVASKKTELPDGSYRHSSKGYEEIHVPA
LKPKPFDPNEKLIKISDMPDWAQPAFKGMKELNRVQSKVYETALFKADNILLCAPTGAGK
TNVAVLTILQQIALNRNSDGSFNHSDYKIVYVAPMKALVAEVVGNLSNRLQYYDVKVREL
SGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE
SVVARTVRQIETTNEHIRLVGLSATLPNYEDVALFLRVDTKKGGLFHFDNSYRPVPLSQQ
YIGITVKKPLQRFQLMNDVCYEKVMAVAGKHQILIFVHSRKETAKTARAIRDTALANDTL
GRFLKEDSASREILHSQTDLVKSNELKDLLPYGFAIHHAGLARADRQLVEELFSDGHVQV
LVSTATLAWGVNLPAHSVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGI
IITGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWIGYTYLFVR
MVRNPTLYGLPHDIIDRDKFLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIA
SYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPI
KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLA
EKALNLCKMVNRRMWSVQTPLRQFHGIPNDILMKLEKKDLAWDRYYDLSSQEIGELIRIP
KMGRTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVEPFWVIVEDN
DGEYILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQTVLPVSFRH
LILPEKYPPPTELLDLQPLPVTALRNPAYEALYKDFKHFNPVQTQVFTVLYNTDDNVLVA
APTGSGKTICAEFAILRNYQKGPESVMRVVYIAPLEALAKERYRNWERKFGKGGLKMRVV
ELTGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIVDELHLIGGQGGPI
LEVGVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATAHGLFNFPPGVRPVPLEIH
IQGVDIANFEARMQAMTKPTYTAIVQHAKNGKPALVFVPTRKHVRLTAVDLMTYVAGDGS
KSFLLQTPEELKPFIDKINDEMLKATLRHGVGYLHEGLTKLDQEVVSQLFEAGWIQVCVM
SSSMCWGVSLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC
HAPRKEYYKKFLYEAFPVESHLHHFLHDNLNAEIVAGIIENKQDAVDYLTWTFMYRRLTQ
NPNYYNLQGVSHRHLSDHLSELVENTLSDLESSKCVAIEDDMDLSPLNLGMIASYYYISY
TTIERFSSSLTSKTKMKGLLEILASATEYALLPIRPGEEEVVRRLINHQRFSFENPKCTD
PHVKANALLQAHFSRQNVGGNLASDQREVLLSASRLLQAMVDVISSNGWLSLALLAMEVS
QMVTQGIWERDSMLLQLPHFTKELAKKCQENPGKNIETVFDLVEMEDDERRELLQMSDEQ
LLDIARFCNRFPNIDMTYEVLENDNVRAGEDITLQVTLERDLEGRTEVGPVDAPRYPKAK
EEGWWLVVGDTKSNQLLAIKRVSLQRKAKVKLEFAAPADAGKKPYTLYFMCDSYLGCDQE
YSFSVDIKEAGPDEDSGRE
NT seq
6540 nt
NT seq
+upstream
nt +downstream
nt
atggcacatttgggcggtggtgctgaagcacacgccaggcataagcagtatgagtatcga
gccaactcgagtctggtcttgactactgactctcgtccacgtgacactcatgagcccacg
ggagagcccgaatctctatggggaaagattgaccccaggagctttggtgacagagcatac
cgggggaaacccccagaattggatgagaagcttaagaaatcaaagaagaagaaggagcgt
gacccgcttgctgagcctccacctagtcgccagagcaagcgtcgccgccttcaagaagag
agtgtattgaattcatcggaggaaggtgtttaccagcccaagacgaaggaaacgagggct
gcctatgaggctatgcttagcgtaattcagcaacagttgggtgggcagccacttagtatt
gttagtggtgctgctgatgagatattagctgtactaaagaatgagacacttaagaaccct
gacaagaagaaggagattgagaagcttttgaattctgtaccgaatgctgtttttgatcag
ttggtatcgattggaaggcttattactgattaccaagatgggggtggtgatgtggctggg
actgctgcagctgctgctaatggtgatgatggtcttgacgatgatgtgggtgttgcggtt
gagtttgaagaaaatgaggaggaggatgaggagagtgatcttgatatggtgcaagaagat
gaagaggaggaagatgatgtggtggaagccagtaattctggggctatgcaaatggggggt
gggattgatgatgatgatgatatgcaggaagcaaatgggggaatgaaccttaatgttcta
agcattggtgcttattggcttcaaggaaagatttctgaagcatttcaaaaacagattgat
ccgcaacaatgccaaattcttgcagaagatgtgcttaagatactagctgaaggtgatgac
agggaagttgagtcgaagctgttgttgcttcttcagttcgataaatttagccttattaag
attctgttgaggaaccggcttaagattgtgtggtgtacccgcttggcaagggccgaagat
gaagaacaaaagaagaagattgaggaggaaatgatgggtttggggccggaattggtggca
attgtggatcagttgcatgccacgagggctactgcaaaagaaaggcaaaagaacttggag
aagagtattagagaagaggctcgtcgtttgaaggatgagagtggtggagatggcgacaaa
ggtaggatagggattgttgatagagatgcggacagtgtttggggccagcgccagttgctt
gatcttgacagtattgcttttgaacaaggtggtcgtttggtggcttcaaaaaagactgag
cttccggatggatcttataggcattctagcaagggatatgaagaaattcatgtgcctgca
ttgaagccaaagccatttgatccaaatgagaaacttataaaaatatctgacatgccagac
tgggcacaaccagctttcaaaggaatgaaggagttgaacagggtacagagtaaagtctat
gagactgccctttttaaagctgacaatatcctcttatgtgctcccactggggcagggaaa
actaatgttgcagtgctcaccatacttcagcagatagcattgaacaggaattcagatggt
tcatttaaccatagtgattataagattgtatatgttgcacctatgaaagctcttgtcgct
gaagttgttggaaatttatctaatcgtttgcagtattatgatgttaaagtcagggagcta
agtggagaccagtcattgactcgccaacaaattgaagaaactcaaattattgtcacaact
cctgagaagtgggatatcattaccaggaagtcaggtgatcgaacttatacacaacttgtg
aaacttcttatcattgatgagattcatcttcttcatgataacagaggacctgtgctagaa
agtgttgttgctagaactgttagacagattgaaactacaaatgagcatattcggttggtt
gggctatctgctacactacctaattatgaagatgtggcgttgttcttacgggttgatacc
aagaaaggaggattgttccactttgacaatagttacagacctgtccctctttctcagcag
tatattggaatcacagtgaagaagccactgcagaggttccagttgatgaatgatgtctgt
tatgaaaaggtaatggcagtggcagggaagcatcaaatactaatttttgtccactcaagg
aaggaaacagccaaaacagcccgtgccatacgagatactgctcttgctaatgatactctt
ggtagatttttgaaagaggacagtgcaagtcgtgagattctccactctcaaactgatctg
gtcaagagcaatgaacttaaagatctattgccatatggttttgcaattcatcatgctggg
ttggcaagggctgaccgccagcttgttgaggagttgttttctgatgggcatgtgcaagtt
ttggtttctactgcgacacttgcttggggtgtgaatttgcctgctcactcagtgattatt
aaggggacccagatttataatccagaaaagggagcatggactgaacttagtcctctggat
gttatgcagatgctgggtcgtgcaggaaggccccagtatgattcttatggggagggcata
atcattactggtcatagtgaacttcaatattatctttctctaatgaatcaacagctcccc
attgaaagtcagtttgtgtcaaaattggctgatcaattgaatgcagaaattgttctcgga
actgttcaaaatgctagagaagcctgtaattggattgggtacacgtacttgtttgtccgt
atggtgcggaaccctacgctatatggtttaccgcatgatattattgatagagataagttt
ttggaagagcggagggctgatttgatccattctgctgcaaccatattggacaaaaataat
ttggtgaagtatgatagaaaaagtggatatttccaggtaacggacttgggtcgcattgct
agctactactatattactcatgggacgatatccacgtataacgagcatttgaagcccact
atgggggatattgagctttgtcggttgttctcactcagtgaagaattcaaatatgttaca
gtgagacaagatgagaagatggaacttgcaaagcttttagatcgtgttcctattcctatc
aaggaaagcttggaagagcctagtgccaagattaatgttttgctgcaagcatatatttca
cagttgaagcttgaaggcctttcattaacatctgacatggtgttcataactcagagtgcg
ggacgtcttatgcgagctctttttgagattgtcttgaaacgtggttgggctcaattggct
gagaaggctttaaacttatgcaaaatggttaacaggaggatgtggagtgtccaaacacct
cttcgccaattccatggaatcccaaatgatattttgatgaagttggagaagaaggatttg
gcctgggataggtattatgacctttcatcacaggagataggggagcttattcgcatccca
aagatgggaagaacgcttcacaagttcatccatcaattccctaagcttaaccttgcagcg
catgttcagccaattactcgcactgttttgagggttgagctcacaataacaccggacttt
cagtgggaggacaaagttcatggatatgtggagccattttgggtgattgtagaggataat
gatggtgaatacattcttcatcatgaatattttatgctgaagaagcagtatattgatgaa
gatcacactttgaatttcacagtgccaatttatgaaccattgccacctcagtacttcatc
cgtgttgtgtcagatagatggcttgggtcacaaactgttttacctgtttctttcaggcac
ctcatcttgccagaaaagtatcctccaccgacagagctattggacttgcaaccgctgcct
gtgacagccttaaggaatccagcatatgaagctctttataaggattttaagcattttaat
cctgttcagacgcaggtattcactgttttgtataatactgatgacaatgtcttggttgct
gcaccaacaggaagtgggaagaccatatgtgcagagtttgctatcctgaggaactatcaa
aaaggacctgagagtgttatgcgtgttgtatatattgcacctcttgaagcactggccaag
gaacggtatcgcaattgggagaggaagtttggtaagggtggtcttaaaatgcgggtggtt
gaattaacgggggagactgctacagatttgaaacttcttgagaagggtcagataataatc
agtactcctgagaaatgggatgctttgtcacgccgctggaaacagagaaaacatgttcaa
caggtcagccttttcatcgttgatgaactccacttgattgggggtcaaggtggtcccatc
ttggaggtgggtgtttctcggatgaggtatattgcaagccaagttgagaacaagatacga
attgtggctctgtcaacttctcttgcaaatgcaaaggatcttggggaatggattggtgct
actgctcatggccttttcaactttcctcctggtgtccgtccagtgccattggaaatacac
attcaaggggtagatatagctaattttgaagccaggatgcaagcaatgacaaaaccaaca
tacactgcgattgttcaacatgccaaaaatgggaagcctgctcttgtttttgttccaaca
aggaagcatgtccgactcactgctgtggatctgatgacatatgtggctggtgatggcagt
aagtcatttttattgcagactcctgaagaactcaagcctttcattgacaaaattaatgat
gaaatgttgaaagccactttacgtcatggagtgggctacttgcatgagggcttaactaag
ttggatcaagaagttgtgtcacagctgtttgaggctgggtggattcaggtttgtgtcatg
agcagttcaatgtgttggggagtttcattgtcagcccatttggtggtggtgatgggaacg
caatattatgatggtcgggaaaatgcacacactgattaccctgttactgatctgttgcaa
atgatgggtcatgccagtcgacctttgttagataattctgggaaatgtgtcatcctttgc
catgcacctcgtaaagagtactacaagaagttcttgtatgaagcattcccggttgaaagc
catttgcaccactttctacatgataatctgaatgctgaaattgttgctggaattattgag
aacaagcaagatgctgtggattatcttacatggacatttatgtacaggaggctcacacaa
aatcccaactattacaatcttcagggagttagtcacaggcatctctctgatcatctgtca
gagcttgtagagaacacattgagtgatttggaatcgagtaagtgtgttgctattgaggat
gacatggacctttctcctttgaatctgggcatgatagcatcatattattacatcagttac
actactatagagcgtttcagttcttctttgacttccaaaacaaagatgaagggtcttctg
gagatcctggcttcggctacagagtatgcacttcttcctatacgacctggggaggaagag
gtggttaggaggctgattaatcaccagaggttttcatttgaaaatcccaaatgtacagat
ccacatgtgaaagctaatgcacttcttcaggcccacttttcaaggcaaaatgttggtggg
aacctagcatcagaccagcgagaggtgcttctttctgctagtagattgcttcaggcaatg
gttgatgttatttcaagcaatggctggctgagccttgctcttcttgcaatggaagtcagc
caaatggtgacacagggcatttgggagcgtgattccatgcttttacagcttccccacttc
acaaaggagttggccaagaaatgccaagaaaaccctggaaagaatattgagaccgttttt
gatttggtggagatggaggatgatgagaggcgtgagttgctgcagatgtcagatgagcag
ttgcttgatattgcacgattttgcaaccgttttcccaatattgatatgacatatgaagtg
cttgagaatgacaatgtgagggctggggaggatatcactctgcaagtcacccttgagcga
gatcttgagggaaggacggaggtgggacctgttgatgctcccaggtatccaaaggccaaa
gaagaagggtggtggcttgttgttggtgataccaaaagtaaccagttgcttgccatcaag
agagtttccctgcaaaggaaggcaaaggttaagcttgaatttgctgctcctgcagatgct
ggaaagaagccatacaccctctatttcatgtgtgattcatatttgggttgtgaccaggag
tatagcttcagtgttgatatcaaagaagcaggcccggatgaagacagtgggagagaataa
DBGET
integrated database retrieval system
