Quercus suber (cork oak): 111988876
Help
Entry
111988876 CDS
T05868
Name
(RefSeq) LOW QUALITY PROTEIN: nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111988876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
111988876
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
111988876
mRNA cycle factors
Common to processing body (P body) and stress granule
111988876
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
111988876
NCBI-ProteinID:
XP_023876448
LinkDB
All DBs
Position
Unknown
AA seq
998 aa
AA seq
DB search
MMIVQMDKMSAPPSRERAQRLYEKNIELENKRRRSAQARIPSDPNAWQQIRENYESIILE
DHGFSEQHNIEYALWQLHYKRIEELRGHFSSALASAGSNTSQGVKGPARPDRITKIRLQF
KTFLSEATGFYHELILKIRDKYGLPLGYFSEESENRIVMEKDGKKSAEMKKGLISCHRCL
IYLGDLARYKGLYGEGDSKSREFAAASSYYLQAASLWPSSGNPHHQLAILASYSGDELAA
VYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQLPEDVKASVVKGSPVRVTGKGRGKGD
AKLVSKDINSESSQVKERASAVPEMYKSFCIRFVRLNGILFTRTSLETFAEVLSLVSSGL
CELLSSGPEEDLNFGADARENGVLIVRLIAILVFTVHNXKKEAEGQTYAEIVQRAVLLQN
AFTAVFELXGRILERCVQLREPSSSCLLPGILVFVEWLACCPDIAAGSDVDEKQATIRSK
FWNHCISFLNKLLSNGPMSIDDDEDESCFNNMSRYEEDETENRLALWEDLELRGFLPLIP
AQTILDFSRKHSFGGDGNKEKMARIKRILAAGKALANVVRVDQETIHFDSKVKKFVIGVE
PQVSDDFVLPTTYSGIPNTNSIMIEKQMETSKNLGVLQPNPELLMEEEEEDEVIVFKPTV
AERRTDVVGLKWDRYXGLEPGQNASAGDLNFLGNSVSAPLGNLQQQIALDVGSQVPTSFG
NMVPQHFQSAQSHALKWPLEDEAILANXLQGLSFVENGHIMKSEQQDFGMSTPAVFSASI
QQAIGPNTSGMSYSLAKVPEAVIPSKIDAFASSGAMSDNLAVKTSSALPVGLRKSPVSRP
VRHIGPPPGFSPVPSKQVNEPISGSDLVNENPLMDDYSWLDGYQLPASAKGSMSNSSVNY
PSYSNPQPISISNGMNGTVSFPFPGKQVPAMPFSVENQKGWQEYQMLEQLNLHHEQQLQL
QQQHQLVNGNQHFTPLPEQYKGQSVWTGRYFVYVGMRV
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgatgattgtacaaatggataaaatgtctgctcctccatcaagggagcgtgcccaacgt
ctttatgagaagaatattgaactggagaataagcgtcggaggtctgcccaggcacgaatc
ccgtcagatcccaatgcctggcaacagattcgtgagaattatgagtcaataattcttgag
gatcatggtttctctgagcagcacaatattgaatatgctctatggcagctacattacaag
cgaattgaggaactgagaggacactttagttctgctctagcttctgcaggctcaaacaca
tctcagggtgtgaaaggccctgcacggccagaccgaattacaaaaataagattgcagttt
aaaacctttctttcagaagcaactgggttttaccatgaactcattttgaaaatcagagac
aagtatgggcttcctctgggttatttctctgaggagtcagagaatcgaattgttatggag
aaagatgggaaaaaatctgctgaaatgaagaaaggtctgatatcttgtcatcgttgtctg
atatacttgggtgaccttgcacggtacaaaggattatatggggagggtgactccaaaagt
agggagtttgcagcagcttcaagttattacttgcaagctgcatctctttggccatcaagt
ggaaatccccatcatcagcttgctatattggcttcctattcgggggatgagctggcggct
gtttatcgatatttccggagtttggcagtggatagtccattttcaactgcaagggataac
ttgattgttgcatttgagaagaatcgtcagagttactctcaactacctgaggatgttaaa
gcttctgtcgttaaggggtcacctgtgcgggtgactggcaaaggaagagggaaaggggat
gcaaaacttgtatcaaaagatatcaactcagaaagtagccaggttaaggagagagcttct
gctgtgcctgagatgtataaatccttttgcatccgatttgttcgtctaaatggcattctt
ttcacacgtacaagcctggagacatttgcagaagttctctctttggttagcagtggttta
tgtgagcttctgtcttctgggcccgaagaagatctgaattttggtgcggatgctcgtgag
aatggagttctcattgttagacttattgccatccttgtatttacagttcacaatngtaag
aaagaggctgaaggtcagacttatgcggaaattgtacagcgtgctgttctactccagaat
gcatttactgcagtttttgagttgnatggacgcatattggagagatgcgtgcagctacgt
gaaccttcatcaagttgcctcttacctggcattctggtgtttgtagaatggttggcatgt
tgcccggatattgcagcaggcagtgatgtggatgaaaaacaggcaacaattagatcaaaa
ttttggaaccattgcatttctttcttaaacaagctcttgtccaatgggccaatgtccata
gatgatgatgaagatgagagttgctttaataacatgagcaggtatgaagaagatgaaact
gaaaacaggcttgctttgtgggaggaccttgagttaagaggtttcttgccactaattcca
gctcaaaccattttggatttttcaaggaagcattcctttggaggtgatggtaacaaggaa
aaaatggctcgtattaaaaggattctagctgcagggaaggctctggcaaatgtggttagg
gttgatcaagaaacaatacattttgattcgaaagtgaagaaatttgttattggtgttgag
cctcaagtctcggatgattttgtgcttccaaccacttattcaggcatccctaatacaaac
agtatcatgattgaaaaacaaatggagacatcaaagaatttgggtgttctgcagccaaat
cctgagctacttatggaagaggaagaggaggatgaagttatagtttttaaaccaacagtg
gctgagaggcggactgatgtggttggtttaaaatgggatcggtatnggggcctggagcct
ggtcaaaatgcttctgcgggtgatctgaattttcttggtaattctgtttcagctcctcta
ggtaatcttcagcagcagattgctcttgatgtgggttcacaagtgcctacatcctttggt
aatatggtcccccagcattttcaatcagctcaatctcatgctttgaagtggccactggaa
gatgaagcaattcttgctaatnggcttcaaggtctaagctttgtggagaatggtcatata
atgaaatccgagcaacaagattttggcatgtccactcctgctgtgttttcggcttccatc
cagcaagctattggtcctaatacttctggtatgtcttacagtcttgcaaaagtcccagaa
gctgtgataccatctaagattgatgcttttgcatcttctggagccatgtctgacaatttg
gctgtaaagacatcatcagcattgccagtaggtttgagaaaaagtccagttagtcgacct
gttagacacattgggcctccacctggtttcagccctgttccttctaaacaagtgaatgaa
cccatttctggttcagatttggtgaatgagaatccattgatggatgattatagctggttg
gatggatatcagttgccagcatcagctaaaggctctatgtcaaatagttcggtcaattac
ccatcttattcaaacccccagcccatcagtatcagcaatggcatgaatgggactgtcagt
tttccatttcctggaaaacaagttccagccatgccattctcagtagaaaatcaaaaaggc
tggcaagaataccagatgcttgagcagctaaatctacaccatgaacagcagttgcagttg
cagcagcagcatcaacttgtcaatggaaatcagcactttactccactgcctgaacaatat
aaaggacagtccgtttggacaggtcgttacttcgtgtatgtcggtatgagagtatag
DBGET
integrated database retrieval system
