Quercus suber (cork oak): 111989522
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Entry
111989522 CDS
T05868
Name
(RefSeq) LOW QUALITY PROTEIN: putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
111989522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsu03021
]
111989522
03019 Messenger RNA biogenesis [BR:
qsu03019
]
111989522
Transcription machinery [BR:
qsu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
111989522
RNA polymerase I system
111989522
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
111989522
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW6_SPT51-2
KOW2_Spt5
KOW4_SPT5
Spt5-NGN
KOW
KOW7_SPT5
KOWx_SPT5
KOW5_SPT5
Spt5_N
DUF4438
GPKOW_C
Motif
Other DBs
NCBI-GeneID:
111989522
NCBI-ProteinID:
XP_065630624
LinkDB
All DBs
Position
Unknown
AA seq
1060 aa
AA seq
DB search
MPRRGGDEDDDDLEPEEEGYFEEDEPGQLYDEDEEEEEEEEDRRGSSRKRQRSAYIDDVA
EEDDEEYEDSDEDYGGGGGGGGGGGGGRDKRKKTKKSGQEFFDLEAQVDSDDEEEEEEGE
DDFIDNGGADLPDDDDGRRIHRRPLLPREDEQEDVEALERRIQARYARSSHAEYDEETTD
VDQQALLPSVRDPKLWMVKCAIGREREAVVCLMQKSIDKGPELQIRSAVALDHLKNYIYI
EADKEAHVKEACKGLRNIFSQKVMLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGD
LAKVVDVDNVRQRVTVKLIPRIDLQALASKLEGREVVKKKAFVPPPRFMNIDEARELHIR
VERRRDPMTGDYFENIGGMMFKDGFLYKTVSMKSISSQNIKPTFDELEKFRKPGENGESD
MASLSTLFANRKKGHFVKGDAVIVIKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVN
EKELCKYFEPGNHVKVVSGTQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEV
TSGVTRIGDYELHDLVLLDNMSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKIDK
KNSVQDRYKNTVAAKDVVRIIEGPCKGKQGPVEHIHRGILFIYDRHHLEHAGFICAKAHC
CVIVGGSRGNGDRNGDSYSRFANLRTPPRIPQSPKRFSRGGHPMDSGGRHSHRGGRGGHD
GLVGTTVKVRQGPFKGYRGRVVEVKGSLVRVELESQMKVVTVDRNFISDNVVVSTHIGKY
LIDAPRYGSGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPR
DNWEDGNPGSWGTSPQYQPGSPPSRTYEAPTPGSGWASTPGGNYSEAGTPRDSSSAYANA
PSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTXGTGGLDAMSPVIGGDNEGPYFMPDILV
NVRRSGEDSVVGIVREVLPDGSCRIVLGSSGNGETITVLPNEMDVVVPRKNDKIKIMAGV
LRGATGKLIGVDGSDGIVKVDDTLDVKILDLVLLAKLAQP
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgccccgtcgcggcggagacgaggatgacgatgacctggagcccgaggaggaagggtat
tttgaggaggatgagccagggcagctctacgatgaagatgaggaggaagaggaggaggag
gaagatagacgcggatcgagtaggaagcgccagagatcggcgtacatagacgatgtcgcc
gaggaggacgacgaggagtatgaagatagcgatgaggattatggtggcggcggcggcggc
ggcggcgggggcggtgggggcagggacaagaggaaaaagaccaagaagagtggccaagag
ttcttcgacctcgaggcgcaggtcgattctgatgacgaagaggaagaggaggaaggcgag
gatgacttcattgataatggtggtgcggatctgcctgatgatgatgatggtagaagaatt
catcgtcgcccactgctgccgcgggaagatgagcaagaagatgttgaagctcttgagagg
aggatccaggctagatatgcaaggtctagccatgcagagtatgatgaggagaccacagat
gtagatcaacaagctcttttgccatctgttagggatccaaagctgtggatggtgaaatgt
gcgattggtcgagaacgagaagcagttgtttgcctgatgcaaaagtccattgataaagga
cctgaattgcaaatcaggtctgctgttgcccttgaccatctcaaaaactatatatatatt
gaagcagacaaagaagcccatgttaaggaggcttgcaaaggtttgcgcaatatattttct
cagaaagtaatgctggtccctattagagaaatgactgatgttctttcagttgaaagcaaa
gcaattgatctctctagggatacttgggtcagaatgaagattgggacatataaaggggat
cttgcaaaggtggtggatgtagataatgtgaggcaaagagttacagtaaaattaattcca
aggatagacttacaggctcttgcaagcaaattggagggcagagaagttgtgaagaagaag
gcatttgttcctcctccacgttttatgaacattgatgaggctagagaactccatattcgt
gtagagcgcagacgagatccaatgaccggagattattttgagaacattggtggcatgatg
tttaaagatggttttttgtataaaacagtatccatgaaatcaattagctctcaaaatata
aaacctacttttgatgaacttgaaaaatttcggaaacctggtgagaatggagagagcgat
atggctagtttgtcgactttatttgcaaatagaaagaaagggcattttgtgaagggtgat
gcagttattgttatcaagggagatctcaaaaacttgaagggatgggttgagaaagttgag
gaagagaatgttcacatcagaccagaaatgaagggccttccgaaaactcttgctgtaaat
gaaaaagagctttgcaagtactttgaacctgggaatcatgtgaaggttgtctctggtaca
caggaaggtgcaactggtatggttgttaaggttgagcagcatgtcctcataatattatct
gatacaacaaaggaacatatacgtgtgtttgctgatgatgttgtagaaagctctgaggta
acttctggtgtcacaagaattggggactacgagcttcatgatctagtgcttctggataat
atgagttttggtgtaattattcgtgtagaaagtgaagcatttcaggttctcaagggagtt
cctgacagacctgaggttgctcttgttaagttaagagagattaaatgcaagattgataag
aaaaacagtgtgcaagatcggtataagaatactgtagctgcaaaagacgttgtgaggatt
attgagggtccctgcaaagggaaacaaggccctgtggaacatatacacagaggaatcttg
ttcatctatgatcgccatcaccttgagcatgcaggctttatatgtgctaaagcccattgt
tgtgttattgtgggaggatcacgtggcaatggtgatagaaatggtgattcatactcaaga
tttgctaatctcagaactccacctcgtattcctcaatccccaaagagattttctcgagga
ggtcatccaatggactctgggggaaggcatagccatagaggtggaagaggaggccatgat
ggtttggttggtacaacagtaaaagtccgccagggtcctttcaaaggctaccgtgggcgt
gtagtagaagttaaaggctcattagttcgggttgaattggagtcacagatgaaggttgtc
acagttgaccgcaattttatttctgataatgtggttgtttctacccatatcggtaaatat
ctaattgatgctcctcgctatggcagtgggagtgagactcccatgcatccttctcgaact
ccattacatccgtatatgactcctatgagagatcctggagcaacacccattcatgatggc
atgaggacacctatgcgtgatcgagcatggaatccttatacgccaatgagtccgccaagg
gataattgggaagatggaaaccctggctcttggggaaccagtccacagtatcagccagga
agtcctccttcacgtacatatgaagcgccaactcctggttctggttgggccagtactcct
ggtggcaattatagtgaagctggaacaccaagggatagcagttctgcctatgccaatgct
cctagcccttacttgccatcaactcctggtggacagccaatgactccaaattcagcttcc
tatcttcctggcactcccggagggcagccaatgacancgggaactggtggtctggatgcc
atgtctcctgtcataggcggggacaatgaagggccatatttcatgccagacatattggta
aatgtacgcaggtcaggagaggattctgttgtaggaattgtccgggaggtgcttccggat
ggctcttgtaggattgttcttgggtcaagtggcaatggtgaaaccataacagttcttcct
aatgaaatggatgtggttgtaccaaggaaaaatgacaagattaaaatcatggctggtgtg
ctacgtggtgccactggtaagttgattggtgtggatggcagtgacggaattgtaaaggtg
gacgacactcttgacgttaagattttagacttggttcttttggcaaagctagcacaacca
tga
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