Quercus suber (cork oak): 111989588
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Entry
111989588 CDS
T05868
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111989588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
111989588
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
111989588
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
111989588
NCBI-ProteinID:
XP_065636416
LinkDB
All DBs
Position
Unknown
AA seq
908 aa
AA seq
DB search
MMDEHHHHRDEAEAGAAKAQTLASSLSKLSASSLGVPSGKDFHFFNNFDDFKNPIREISN
KSTSMLHAINDTAQVWRQQEGPPKAAAAAAFPEADMDDAYDWLVNVNDELLERFDVSADD
FRKKEETDSSGFHLVSYGNKKKGASASASASASASAVKVATKTKPKVPFHIPSIRKPQEE
FNILVNNSNQPFNHVWLQQQTGDDDQTTTFIHPLEKLSFMDFVDKDIGNVDPVNPPSIES
TPFKLVEEVKDLKELAAKLRGVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKL
RIHIGPYLREVFKDPTKRKVMHGADRDIVWLQRDFGIYICNLFDTGQASKVLKLERNSLE
FLLHHFCGVSANKEYAFXINFQFHXIQLLLYAREDTHYLYAMPKEVENIDAPLVEVYKRS
CDVCMQLYEKELLTENSYLHIYGLHGASLDAQQLAIVAGLCEWRDVVARAEDESTGYILP
NKTLLEIAKQKPDTTGKLRRLVKSKHPYVEHNLSPVLSIIRHSVQNAAAYEAIAEHLKVG
LMEIASEEIKVTDGSDAFSPDALIKREAGNARRVSVDGGDTMNGNMSALLHSPQLKDESS
ELGCSASEVDKDGKGFPFEHSDKSGNISINSDGYSSQLVGGSLTTGQSRDALDDTLGLGS
AKVTGATVQMLKKPSRAFGALLGNSAPKRKFDTNKKEEIKLEQIRSSVNFPFHSFSGTSE
QSKLVIEVPDTAVETCQPQGHAAVPAANSRSDDIIMLEDNLNVEEPIHGNLEATDEHKSD
FGASASEMDDEPMSLSELSSSFQQCFESINQNGNGRNNEKSQEAGCVLQLKPFDYEAARK
HVRFGENPEDELGSEGDKGLKSRRDSGGKKKGPIKGRVQRDDDGTGEFPQGRRRQAFPAT
GNRSATFR
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgatggatgagcatcaccaccaccgtgacgaagctgaagccggagccgccaaggcccaa
accctagcctcctcactgtccaagctctccgcctcctctctcggcgtaccctccggcaaa
gactttcacttcttcaacaacttcgacgacttcaagaaccccatccgtgaaatctccaac
aaatcaacgtcgatgctccacgctataaacgatactgctcaggtttggagacaacaagaa
ggaccgcccaaagctgctgctgctgctgcgttccctgaagcagacatggacgacgcctac
gattggctcgtgaatgtcaacgacgagcttcttgagcggtttgatgtgtcggccgacgac
ttccggaagaaggaagagactgactcctctgggtttcatttggtgtcttatgggaataag
aagaagggggcgagtgctagtgccagtgccagtgctagtgctagtgctgtaaaggtggcc
acgaagaccaaaccgaaggtgccatttcatataccatccataaggaagccacaagaggag
tttaatattttggtcaataattccaaccagccctttaaccacgtttggttgcagcagcag
accggcgacgatgaccaaaccaccacctttattcatcccctagagaagctttcttttatg
gattttgttgataaagacattgggaatgtggatcctgtaaaccccccctctatagagtct
acacctttcaagcttgtggaggaagtgaaagatttgaaagagttggctgctaaattgcgt
ggtgtaaatgaatttgcggttgatttggaacataatcaatatcgatcttttcaagggttg
acttgcttgatgcaaatatctaccagaacagaagattttgttgtagatactctaaagctt
cgaattcatattggcccatatttaagggaggttttcaaggaccctaccaagagaaaggtt
atgcatggagcagatcgagatattgtgtggcttcagcgggactttggcatttacatttgc
aatttgtttgacactggccaggcctcgaaggtattgaaattggagagaaatagcttggag
tttcttttgcatcacttttgtggagtttctgctaacaaagagtatgctttttaaattaat
tttcagtttcactagattcagctgttactatatgccagagaagatacacactatctgtat
gcaatgcctaaagaggtcgaaaatattgatgctccgttagtagaggtttacaagcgcagt
tgtgatgtgtgcatgcagctatatgagaaagagcttttgacagaaaattcatatctccat
atatatgggttgcatggtgccagtctcgatgctcagcagcttgccattgttgcaggcctt
tgtgagtggcgagatgtggttgctcgtgctgaggatgagagtactggatatatattgcca
aacaaaactcttcttgaaattgccaagcagaagcctgacactactggcaagttacgtcga
ttggtgaaatcaaagcacccttatgttgaacacaatctctctcctgttcttagcatcatt
aggcattctgtacaaaatgctgctgcatatgaagctattgctgaacatctgaaggtggga
cttatggaaattgcatcagaagaaattaaagttacagatggatctgatgccttctcacct
gatgctcttataaaacgtgaagctggaaatgctagaagagtaagcgttgatgggggcgat
acaatgaatggtaatatgtctgcacttttgcattctcctcagctgaaagatgagtcttca
gagcttggatgcagtgcctctgaagttgacaaagacggaaaaggattcccctttgagcat
tcagataaaagtgggaacatcagtataaattctgatggttatagttcacagcttgttgga
ggaagcctcactactgggcagagcagagatgcacttgatgataccttggggttgggttca
gcaaaggttactggagcaactgttcagatgcttaagaagcctagccgtgcttttggggca
ctcctggggaattcagccccaaagcgaaagtttgataccaacaaaaaggaagagatcaag
ttggagcaaatcagatcttcagtgaactttcccttccactctttttctggcacaagtgag
cagtcaaaattagttatagaagtgccagatacagccgtggaaacttgtcaacctcaaggg
catgctgctgtgccagctgccaactctagatcagatgatattataatgttggaagataat
ctaaatgtagaggaaccaatacatggaaatttagaagccacagatgagcataagagtgat
tttggggcgtctgcttcggaaatggatgatgagcctatgtctctctctgaattgtcatca
agcttccagcaatgctttgagtcaattaatcaaaatgggaatggcagaaacaatgagaaa
tctcaggaagctggctgcgtcttgcagctgaagccatttgattatgaagcagcaaggaaa
catgtcagatttggagaaaatccagaggatgagttggggtcagagggtgacaaaggttta
aagagtcggcgtgattctgggggtaagaaaaaaggcccaattaaaggtcgagtccaaaga
gatgatgatggaacaggagaatttcctcaaggaagacgacgtcaagcttttccggcaact
gggaacagaagtgcaacttttcgctga
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