Quercus suber (cork oak): 111989971
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Entry
111989971 CDS
T05868
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03022
Basal transcription factors
qsu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111989971
09124 Replication and repair
03420 Nucleotide excision repair
111989971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsu03021
]
111989971
03400 DNA repair and recombination proteins [BR:
qsu03400
]
111989971
Transcription machinery [BR:
qsu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
111989971
DNA repair and recombination proteins [BR:
qsu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
111989971
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
YOMG_N
Motif
Other DBs
NCBI-GeneID:
111989971
NCBI-ProteinID:
XP_065615654
LinkDB
All DBs
Position
Unknown
AA seq
451 aa
AA seq
DB search
MPEVKIIAKNFMDMVASLPAMKLDKLYDNAFICEAILRSLPPLAKKYVLQMLYIDSPITA
KSMEVWVLPDGSSKHRVAIDRLIQLRVFTETVDRRKETTYKINPTFQTNLQKLLTHGEVL
PREPMPSNITVRLPSVEDLDAYAIGQWECFLLQLISSAQAERPSNISSSMMKVFQRGLLS
QRDKEAPRLTESGFQFLLMDTNAQLWYIIREYISNSEERGVDPADLISFLLELSFHVTGE
AYNSNTLTEVQRNTIKDLTDLGLVKLQQGRKESWFIPTKLATNLSVSLTDSSSRKQGFVV
VETNFRLYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFENGIAADQIISFL
QQNAHHRVAERIPTVPENVTDQIRLWESDLNRVEMTPAHYYDEFPSREIFEAACDHAREW
NGLLWEDSKRMRLVVKAEIHIHMRDHLRGQK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgccagaggtaaagataatagcgaagaatttcatggacatggtggcgtccttgccggcc
atgaagcttgacaagctctacgacaacgctttcatctgcgaagccattctcaggtctctg
ccacctttggccaagaagtatgttttacaaatgttatacattgattctccgataactgcc
aagtcaatggaggtgtgggtacttccagatgggtcctcaaagcatagagttgcgattgat
aggttgattcagttaagggtattcactgaaactgttgacaggagaaaggaaacaacttac
aaaatcaatccaacatttcagacaaacctccaaaagcttttaacacatggtgaagttttg
cctagggaaccaatgccttctaacataactgtgaggctcccaagcgtggaggatcttgat
gcatatgccattggacaatgggagtgtttcttgctccaacttataagctcggctcaagct
gaaaggccatcaaatatcagctcttctatgatgaaagttttccagagaggccttttgagt
caaagggataaagaagctccacgattaactgaaagtggtttccagttcttgctgatggac
accaatgcacaactttggtatatcatcagagaatacatctctaattctgaggagagaggt
gtggatccagctgatttaatttcattcctattagagcttagctttcatgtcactggtgag
gcatataatagtaacacattgactgaagttcaaaggaatacgattaaggacctaacagac
ttgggattggtaaaacttcagcagggcaggaaagagagttggtttatacctactaaatta
gctaccaatctttcagtgagcttaacagattcatcgtcacggaaacaaggatttgttgtt
gtggaaaccaattttaggttgtatgcgtactctacttcaaagttgcattgtgaaattcta
cgtcttttctcaagggtagagtatcaacttccgaatcttatagttggagcaatcacaaaa
gaaagtttgtataatgcttttgaaaatggtattgcagcagatcagataatttcttttctt
cagcagaatgctcatcatcgcgtagcagagagaataccaactgtaccagaaaatgtcaca
gatcagattaggctgtgggaatcagatctgaatagggttgagatgactcctgcacattat
tatgatgaatttccttctagggaaatctttgaggctgcttgtgaccacgcacgagagtgg
aatgggttgctatgggaggattcaaaacgtatgcgtcttgtggtcaaggcagaaatacac
atccatatgcgagaccatttacgtggtcaaaagtag
DBGET
integrated database retrieval system
