Quercus suber (cork oak): 111992196
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Entry
111992196 CDS
T05868
Name
(RefSeq) pre-mRNA-processing factor 39-1 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
qsu
Quercus suber (cork oak)
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsu03041
]
111992196
Spliceosome [BR:
qsu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
111992196
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_19
TPR_12
NRDE-2
TPR_2
TPR_7
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
111992196
NCBI-ProteinID:
XP_023879803
LinkDB
All DBs
Position
Unknown
AA seq
850 aa
AA seq
DB search
MGDSETVLSETSAEMGYSSGSHTSTGYVEASSNVAPDTGAPPSEATGGFAAAAAAPADAN
STVPGGSDSGDGNINSTEPNLVMQEAQVDTTFETKPDVGVANTIEKATGLENAAAELSQS
AGNNSSVNGSVVEAGYLAVENGIASENVGRVADEQQFDGFVPAMSAEEDRLWNIVRANSL
DFNAWTSLIEETEKVAQENILKIRKVYDAFLAEFPLCYGYWKKYADHEAHLGSIDKVVEV
YERAVQGVTYSVDIWLHYCIFAIGAYQDPDTIRRLFERGLAYVGTDYLSFTLWDKYIEYE
YLQQEWGRLALIYTRILEYPNQQLDRYFNSFKDLAGSRPLSELRTAEEAAAAAAASAPSE
ASVQLNEGEVHPDAVEQSPKPVSAGLTEAEELQKYIAIREEMYRKAKEFDSKIIGFETAI
RRPYFHVRPLNVAELENWHAYLDFVEREGDFNKVVKLYERCLIACANYPEYWIRYILCME
ASGSLDLSNNALARATQVFVKRQAEIHLFAARFKEQNGDIPGARGAYQLVHTEISPGLLE
AIIRHANMERRLGNLEDAYSLYEQAIAIEKGKEHSQTLPMLYAQYSRFVYMVSGNAEKAR
EILVQALEHVQLSKPLLEALIHFEAIQSLPKQIDYLDSLVVKFIVPDLESPNVASAADRE
ELSCIFLEFLNVFGDVQSIKKAEDRHAKLFLPHRSTSELKKRHAEDYLASDKAKIAKSYS
VPSPAQSLMGAYPSAQNQWTAGYGVQPQTWPPVTQAQGQQWAPGYTQQQAAYSAYSGYGS
NYTNPQMPTSVPQTAAYGAYPTTYPAQQAFPQQSYAQPTAAVAMAPAQAQAQAQPQQPAS
VPQGYYGSYY
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgggagacagtgaaacagtactatctgaaacatctgcagagatgggttattcatctggg
agccacacttccacgggctatgttgaggccagctcaaatgttgctcctgacactggtgct
cccccctctgaggctactggaggttttgctgctgctgctgctgctccagctgatgcaaat
tctactgttcctggtggatctgattcaggagatgggaatataaatagtacagaacctaat
ctggtcatgcaagaagctcaagttgatacaacatttgagactaaaccagatgttggagtt
gctaatactattgagaaagctactggtctggaaaatgcagcggcagagctttcacaatca
gctggtaataattcttctgtgaatggaagtgttgttgaagctggatatctggcagtggag
aatggaattgcttcagagaatgtggggagagttgctgatgagcaacagtttgatggtttt
gtaccggctatgtctgctgaagaagatagactgtggaacattgtgagggctaattcatta
gattttaatgcttggacttccctgattgaagagactgagaaggtggctcaggagaacata
ttgaaaatccgaaaagtttatgatgcttttttggcagaatttcctttgtgttatggttat
tggaaaaagtatgctgatcatgaggctcatctaggctctattgataaagttgtggaagtt
tatgaacgggcggttcaaggtgtgacctattcggtggacatttggttgcattattgcata
tttgctattggcgcatatcaagatccagacaccatccgaaggctttttgagcgaggatta
gcttatgttggaacggattatctgtctttcaccctttgggataaatatattgaatacgaa
tacttgcagcaggagtggggccgccttgctttgatttacaccaggattttggagtatcca
aatcaacaattggatcggtattttaacagcttcaaggacttagctggaagtcggcctttg
tctgaattaaggactgctgaggaggctgcagcagcagcagcagcaagtgcaccttcggag
gctagtgtccagttaaatgagggagaggttcatcctgatgcagtggaacaatctcctaaa
cctgtaagtgctggcttaacagaagcagaggagttgcagaagtatatcgccattagagaa
gagatgtataggaaagctaaagagttcgattctaagatcattggttttgaaacagctatt
aggaggccctactttcatgtgcggcccctcaatgttgcagagcttgaaaattggcatgcc
tatttggattttgtggaaagggaaggtgactttaacaaggtggtcaagttatatgaaaga
tgcctgattgcatgtgccaattatcctgagtactggatacgctatattttatgcatggaa
gctagtggaagtttggatctctcaaataacgcgcttgctcgtgcaacccaagtctttgtc
aagagacaagctgagattcacctttttgctgctcggtttaaagagcaaaatggggatata
cctggtgctcgaggtgcctatcaacttgtacacactgaaatctcacctggactccttgaa
gcaattattaggcatgcaaatatggaacgtcggctgggaaatcttgaagatgcctactcc
ttgtatgagcaggcaattgccattgaaaaaggaaaagaacattcacaaacattaccgatg
ctgtatgcgcaatattctcggtttgtatacatggtttctggtaatgcagagaaagctagg
gaaattcttgttcaagcccttgagcatgtgcagttgtcaaaaccacttcttgaggcttta
atacattttgaggcaattcagtccctaccaaagcaaattgattatttagattcattggtt
gttaagttcatagttcctgacttggagagccccaatgttgctagtgcggctgatagggaa
gagctctcttgcatttttttggagtttctgaatgtctttggagatgtacaatctatcaag
aaggctgaggatcggcatgccaagcttttcttaccccataggagcacctcagaactgaaa
aagcgccatgcagaggattatctagcatcagataaagccaagatagctaagtcctattct
gttccttcacctgcacagtccttgatgggggcatatccaagtgcacaaaaccagtggaca
gctggttatggtgtacagcctcaaacttggcctccagttacacaagcacagggacaacag
tgggcccctggctatacacaacagcaggctgcatacagtgcatatagtggttatggaagc
aattacacaaatcctcaaatgccaacgtcagtgccacaaactgctgcttatggggcttat
cctacaacatatccagcccagcaggccttcccacaacaaagttatgcgcaacctacagca
gctgtggcaatggccccagcccaagcccaagcccaagcgcaaccccagcaacctgcttca
gttcctcagggctattatgggagttactactga
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