KEGG   Quercus suber (cork oak): 111993058
Entry
111993058         CDS       T05868                                 
Name
(RefSeq) uncharacterized protein LOC111993058
  KO
K12828  splicing factor 3B subunit 1
Organism
qsu  Quercus suber (cork oak)
Pathway
qsu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:qsu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111993058
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:qsu03041]
    111993058
   03036 Chromosome and associated proteins [BR:qsu03036]
    111993058
Spliceosome [BR:qsu03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    111993058
 Complex B
    111993058
 Complex C
   U2 SnRNP specific factors
    111993058
Chromosome and associated proteins [BR:qsu03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    111993058
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N UME TAF4
Other DBs
NCBI-GeneID: 111993058
NCBI-ProteinID: XP_023880681
LinkDB
Position
Unknown
AA seq 1278 aa
MDPEIAKTQEERRKMEQQLASMTSLTFDTDLYGGNDRDSYVTSIPVNEDEDNLDSLMDNE
VARKLASYTAPKSLLKEMPRGSDESDDVSGFKKPQRIIDREDDYRKRRLNRVISPERHDA
FAAGEKTPDPSVRTYADVMREEALKREKEETLKLIAKKKKQQQEEEEAAPEKPPADSSAA
AAAAAPKRRNRWDQSQDDGGAGAAAKKAKTSSTSDWDLPDTTPGRWDATPTPGRLGDATP
SASVGRRNRWDETPTPGRVVDSDATPAAGGVTPGATPAGMTWDATPKLSGLATPTPKKQR
SRWDETPATMGSATPMAGATPAAVTPGVTPVGGLDLATPTPGAINLRGAITPEQYNLLRW
EKDIEDRNRPLTDEELDAMFPQEGYKILDPPASYVPIRTPARKLLATPTPMGTPLYAIPE
ENRGQQFDVPKEAPGGLPFMKPEDYQYFGALLNEEEEEKMTSDELKERKIMKLLLKVKNG
TPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELV
RPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNT
TARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLV
EIIEHGLLDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFL
KAIGFIIPLMDALYASYYTKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIR
SDILPEFFRNFWVRRMALDRRNYRQLVDTTVEIANKTGVADIVGRIVEDLKDESEPYRRM
VMETIEKVVTNLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRVK
PYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEY
PEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG
AEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQER
QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYI
YAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHV
INAVMEAIEGMRVALGAAIVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPT
LEDEQNNVYSRPELMMFV
NT seq 3837 nt   +upstreamnt  +downstreamnt
atggatccagagatcgccaagactcaggaggagcggaggaaaatggagcagcaattagcc
tccatgacttccctcaccttcgacaccgatctctacggcggaaacgaccgcgactcctac
gtcacatccatccccgtcaacgaggacgaggacaacctcgattccctcatggacaacgag
gtcgctcgcaaattggcctcctataccgctcccaaatccctcctcaaagagatgcccagg
ggttccgacgagagtgacgacgtttcgggcttcaagaagccgcaacgaatcatcgaccgc
gaggacgattatcggaagcggaggttgaatcgcgtcatctcgccggagagacacgacgct
ttcgccgccggcgagaagactccggacccttcggtgaggacttacgccgatgtcatgaga
gaggaggcgttgaagagagagaaggaggagactttgaagctcattgctaagaagaagaag
cagcagcaagaggaagaggaagccgcccccgaaaagccgcccgcggattcttctgctgcg
gcggcggcggcggcgcccaagagaaggaaccggtgggaccaatcgcaggacgatggcggt
gccggtgctgctgctaagaaggccaagacttcgtctacgtcggactgggacttgccggat
accactcccgggcggtgggatgctacgccgactcctgggagattaggcgatgctacgccg
tctgcttccgtggggaggaggaataggtgggacgagactccgacgccggggagagtggtg
gattcggatgcaacaccggcagcaggcggtgttaccccgggggcaacaccggcgggtatg
acttgggatgccacgccaaagctatcgggtcttgccacgccgacgccgaaaaagcagagg
tcgaggtgggatgaaacgccggctactatggggagcgcaaccccaatggccggggctacg
ccggctgcagttacgcccggtgttactcccgttggtgggcttgatctggcaaccccgact
cccggggcaattaacttgcggggagcaatcacgccggagcagtataatttgttgaggtgg
gagaaggatattgaggacaggaataggccgttgacagatgaggagttggatgcaatgttt
ccgcaagaggggtataagattttggacccgccggcatcctatgtgccaattaggactccg
gcgaggaagctgcttgctaccccaacaccgatggggactcctctgtatgccattccggag
gagaatcgtgggcagcagtttgatgtgcccaaggaagcgcctggtgggttgccattcatg
aagcctgaggattaccagtactttggggcgttgttgaatgaggaggaggaagagaaaatg
acttctgacgagctgaaagagaggaagattatgaagcttctgcttaaggttaagaatggg
acaccaccgcagaggaaaacggctttgaggcagcttaccgataaggcaagagagtttggg
gctggcccgttgtttaaccggattctgccattgcttatgcagcccactttggaggaccag
gagaggcatcttttggtgaaggttattgacagagtgctttacaaacttgatgagttggta
cgaccttatgttcataagattcttgttgtgattgagcctttattaattgatgaggattac
tatgctcgtgtcgagggtagagagattatttctaatcttagtaaagctgctggtttggct
actatgattgctgctatgcgcccggatattgataatattgatgaatatgttaggaacacc
actgcaagagctttcagtgtggttgcttctgctcttgggattcctgctctcttgcccttc
ttgaaggctgtctgtcaaagtaagaaatcgtggcaagctaggcacactgggattaagatt
gttcagcagattgccattttgattggttgtgccgtgcttcctcatctgaggtccctcgtg
gaaatcattgagcatggtttgcttgatgagaatcagaaggtgaggacaatcactgcgttg
tctttggctgcccttgctgaggctgctgccccatatggtattgagagctttgactcggtg
ttgaagcctttgtggaaggggatcaggtctcaccgtgggaaagtgttggctgcattcttg
aaggcaattggttttattattccgctcatggatgcgctgtatgctagttactatactaag
gaggtgatggtcattctgattcgtgagttccagtccccagatgaagaaatgaagaagatt
gttctgaaggtggtgaagcagtgtgtgagtacagagggtgtggaggctgattacattcgc
agtgatatacttcctgaattctttaggaatttctgggtcaggaggatggctttggatagg
agaaactataggcaacttgtggacacaacggtggagatagcaaataaaactggtgttgcc
gatatagtagggagaattgttgaggatcttaaagatgagagtgaaccttacagacgaatg
gttatggaaaccatagaaaaagtggttacaaacttgggtgcatctgatattgatgctcgg
ttagaggagctccttattgatggaatcctttatgccttccaagagcagaccagtgatgat
gccaatgtgatgcttaatgggtttggtgcggttgtgaatgcacttgggcagagagtgaag
ccttacctaccccagatttgtggtaccattaaatggcggttgaataacaagagtgcaaag
gtgagacagcaagcagctgatctcatttcaaggatcgctgttgtcatgaagcagtgccaa
gaggaacaactgatgggccatcttggtgttgtcttgtatgagtatctgggggaagaatat
cctgaagttctggggtcaattctgggagctctgaaagcaattgtcaatgttataggtatg
acaaagatgactcctcctataaaggatttgcttcctagattgacaccaattttgaagaat
aggcatgagaaagtccaggagaactgcattgaccttgttggacgaattgctgaccgtggt
gctgagtttgttccggcgagggagtggatgaggatttgcttcgagcttcttgagatgctt
aaagcccacaagaagggtattcggcgagccacagtgaacacctttggatacattgccaaa
gccattggaccacaagatgtcctggctaccctgttgaataatctcaaggtgcaagagcgg
cagaaccgtgtgtgcacaactgtggcaattgccatagttgcagaaacctgctctcccttt
acggtgctgccagccttgatgaatgagtatcgtgtaccagagcttaatgtgcagaatggt
gtcttgaaatccctctcttttctgtttgagtacattggtgaaatgggaaaagactacatc
tatgctgtgaccccattacttgaggatgccctcatggatagggatttggttcacaggcag
actgcagcttctgctgtcaagcacatggctttgggggttgctggtttgggttgtgaggat
gctttagtccacttgctgaactacgtgtggccaaacatattcgagacttcccctcacgtg
ataaatgctgtcatggaagccattgaaggaatgagggtggccttgggtgctgctattgtt
ctaaactactgccttcaagggctattccatcctgcccgtaaggttagggaggtctactgg
aagatttataactcactgtatattggagcacaagatgcgcttgtggcggcttatcctacg
ctggaggacgagcagaacaacgtatacagtaggcccgagttaatgatgtttgtctaa

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