Quercus suber (cork oak): 111994350
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Entry
111994350 CDS
T05868
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111994350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
111994350
03012 Translation factors [BR:
qsu03012
]
111994350
Enzymes [BR:
qsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111994350
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111994350
Translation factors [BR:
qsu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111994350
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
T2SSE
BEX
NACHT
Motif
Other DBs
NCBI-GeneID:
111994350
NCBI-ProteinID:
XP_023881991
LinkDB
All DBs
Position
Unknown
AA seq
1043 aa
AA seq
DB search
MSLRSFGANYSYCYHCCHCLSSHISFARRFSSSQLRISARAMSYRPNFQGGRRGGSPNSR
GRGGARRGGGGGGGGRGGGRGEQRWWDPVWRAERLRQQQAEMEVLDENEWWGKIEQMKGG
GEQEMIIKRNFSRADQQTLYDMAYQLGLYFHAYNKGKTLVVSKVPLPDYRADLDERHGST
QKEIRMSTEIERRVGNLLNSSESQGTLTSIDSSVAPSQGGKGKPSSSGVNIIKPDSLSDI
DSAKDNLSLELKQRQEKMKVSDSSRAMRSFREKLPAFKMKSEFLKVVAENQVLVVSGETG
CGKTTQLPQFILENKISCLRGADCRIMCTQPRRISAISVAARIASERGESLGETVGYQIR
LEAKRSAQTRLLFCTTGVLLRQLVQDPKLAGVSHLLVDEIHERGMNEDFLLIILRDLLPR
RPDLRLILMSATINADLFSKYFGNAPTIHIPEVTFPVAESFLEDVLEKTHYSIKSEFDNF
EGNSRRRRRQQDSKKDPLTELFEDADIDSQYKNYSVSTRKSLEAWSGSQLDLGLVEATIE
HICRHEGDGAILVFLTGWDDISKLLDKVKANNFLGDPSKFLVLPLHGSMPTINQREIFDR
PPPNKRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQR
RGRAGRVQPGVCYRLYPKMIHDAMLQYQLPEILRTPLQELCLHIKSLQLGTIGSFLAKAL
QPPDALAVQNAIELLKTIGALDDMEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPAL
TIAAALAHRDPFVLPINRKEEADEAKRSFAGDSCSDHIALLKAFEGWKDAKRNGKERAFC
WDNFLSPVTLQMMDDMRMQFVDLLSGIGFVDKSRGANAYNQYSHDLEMVSAILCAGLYPN
VVQCKRRGKRTAFYTKEVGKVDIHPSSVNAGVHLFPLPYMVYSEKVKTTSIYVRDSTNIS
DYALLLFGGNLIPSKTGEGIEMLGGYLHFSASKSVLELIRKLRTELDKLLNRKIEEPGLD
ISMEGKGVVAAAVELLHSQTIHY
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttcgctcattcggcgctaactacagctactgctaccattgctgtcactgcctc
tctagccacatttccttcgctcggcgattctcttcttcgcagcttcggatctcagctcgt
gccatgtcttatcggcccaacttccaaggcggtcgccgcggcggcagccctaacagcaga
ggacgcggtggagctcgccgtggcggcggcggtggaggaggaggccgaggaggaggacgc
ggcgagcagcggtggtgggaccccgtctggcgagccgagcgcctgagacagcaacaggct
gagatggaagtacttgatgagaatgagtggtggggcaaaatagagcagatgaaaggagga
ggggaacaggagatgataattaagcgtaatttcagtcgagcagaccaacaaaccttatat
gatatggcttatcaactggggctttacttccatgcatataataaagggaagactcttgtg
gtcagcaaagttccattgccagattaccgggcagatctcgatgagcgtcatgggtccaca
cagaaagagatacgaatgtccacagaaattgagagaagagttggaaatctattgaatagt
tcagagtcgcaggggacattaacctctatagattcgtctgtagcacccagccagggcggc
aaaggcaagccatcatcatctggtgttaatataatcaaacctgactccttgtcagatatt
gattctgctaaggacaatcttagtcttgaacttaagcagaggcaggaaaaaatgaaggta
agtgattcttcaagggcaatgcggtcattcagagaaaagcttcctgcattcaaaatgaaa
tctgagtttttgaaagttgttgctgaaaaccaggtattggtagtttcaggggagacaggt
tgcggtaaaacaactcagctgcctcaatttattctggagaacaaaatatcatgtttgcgt
ggtgctgattgcagaataatgtgcactcaaccccgccgtatatctgctatttctgttgca
gctcgtatagcatctgaaaggggggagagtctaggtgaaactgttggttatcagatccgc
ctggaagctaaacgttctgctcaaacacggttgctattttgtaccacaggagtattactt
agacagttggttcaagacccaaagttagctggggtgagccatctactagtggatgaaatc
catgaaagaggcatgaatgaagattttttactaataattctgcgtgaccttcttcctcgc
cgtccagatttacgtcttattctaatgagtgctaccattaatgctgacttgttctccaaa
tactttggaaatgccccaactatacatataccggaagtgactttccctgtggcagagtct
tttctagaggatgtgctggaaaaaactcattacagtatcaagtcagagtttgacaacttt
gaggggaattcaaggaggaggaggaggcaacaagattccaagaaggatcctttaacagaa
ttatttgaggatgctgatattgattctcaatacaaaaattacagtgtatccacaagaaag
tctcttgaagcttggtctggttctcagcttgatttgggtctggtggaggcaacaattgaa
cacatctgtcgccatgaaggtgatggagctattcttgtattccttacgggctgggatgac
atctctaagctacttgacaaagttaaagcaaacaatttccttggagatcccagcaagttt
ctagtccttcccctacatgggtcaatgcccaccatcaatcaacgtgaaatatttgatcgt
cctccccctaacaagaggaaaattgtgctggcaaccaatattgctgagagtagcatcacc
atagatgatgttgtgtatgtcattgactgtggaaaggcaaaggaaactagttatgatgcc
ctgaacaaactggcttgtctattaccatcatggatttccaaggcttcggcacatcagaga
cgaggtcgtgctggtcgtgtgcaacctggagtttgttatagattgtatccaaagatgatc
catgatgcaatgcttcagtatcagttacctgagattctcagaacgcctctgcaagaacta
tgcctgcatatcaaaagtttgcagcttggaacgattggatcatttttggcaaaagcactt
cagccaccggatgctcttgctgttcaaaatgcgattgaacttcttaaaacaattggggct
ctagatgacatggaggaacttaccccacttggtcgccatctttgtactctaccattggac
ccaaatattgggaagatgcttcttatggggtctatctttcaatgcctcaatccagcctta
acaattgcagctgctcttgctcatcgtgacccatttgtgttaccaataaataggaaagag
gaagctgatgaagcaaaaagatcctttgctggtgattcttgcagtgaccacattgcactt
cttaaagcttttgaaggatggaaggatgcaaaacgtaatggaaaggaaagagcattctgt
tgggataacttcttatccccagttaccttgcagatgatggatgatatgagaatgcaattt
gtagatctattatcaggcattggctttgtagacaaatcaaggggtgctaacgcttacaac
caatacagccatgatttggagatggtctccgcaatcctttgtgctggactctacccaaat
gtggtgcaatgcaaaagaagaggaaagcggacagcattctacactaaagaagttgggaaa
gttgacattcatccatcatccgtcaatgcaggagttcatctcttccctctaccttacatg
gtttatagtgaaaaggtgaaaacaactagcatatacgtccgagactcgacaaatatatca
gattatgctctacttctatttggtggtaatctcatccctagcaaaactggggagggcatt
gagatgcttggtggttaccttcatttctctgcatcgaagagtgttttagagttgatacgg
aaattgcgcactgaacttgacaagcttctaaataggaaaattgaggaaccgggtttggac
atttctatggagggaaagggagtggttgctgccgcagttgagttactgcacagtcaaacc
atacattattaa
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integrated database retrieval system
