Quercus suber (cork oak): 111996561
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Entry
111996561 CDS
T05868
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111996561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsu03041
]
111996561
03009 Ribosome biogenesis [BR:
qsu03009
]
111996561
Enzymes [BR:
qsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111996561
Spliceosome [BR:
qsu03041
]
Complex A
U1 snRNP components
U1 related factors
111996561
Complex B
111996561
Ribosome biogenesis [BR:
qsu03009
]
Eukaryotic type
Pre-60S particles
Helicases
111996561
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
111996561
NCBI-ProteinID:
XP_065617630
LinkDB
All DBs
Position
Unknown
AA seq
514 aa
AA seq
DB search
MAATATASSSGPRYAPEDPTLPRPWRGLVDGKTGYLYFWNPETNVTQYERPAHSAAQPKS
SVPSSSVQVQQSSQGQRRGYSPDDDDKYARGSNGGSKPEAGSRSQQNARSGTLHSSNVPN
GTLSAGHGGSSTRGHGASDVGADLSPEAYRRRHEITVSGDNVPPPFISFEASGFPPELLR
EVHNAGFSAPTPIQAQSWPIAIQSRDIVAIAKTGSGKTLGYLIPGFIHLKRTRNDAQLGP
TVLVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLREIERGADIVVATPGRL
NDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRK
IAADLLVNPVQVNIGNVDELVANKSITQHIEVLSSMEKHRRLEQILRSQEPGSKIIIFCS
TKKMCDQLARNLTRHFGAAAIHGDKSQGERDHVLSQFRTGRSPVLVATDVAARGLDIKDI
RLGTLFYSHIIYVLVLHSMVHYFPRIKIWGNDIS
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggctgccactgcgactgcctcttcctcaggtccacgttatgctccagaggaccctacg
cttcccagaccgtggagaggccttgttgatggtaaaactgggtacctttacttttggaat
ccagagacaaatgtcactcaatatgagaggcctgcacactcggcggctcaaccaaagtct
tcagtgcctagttcttctgtccaagttcaacaatcttctcaaggacagcgacgtggctat
agtcctgatgatgatgataagtatgccagaggcagcaatggagggtcaaaacctgaggct
ggatcaaggagccagcagaatgcaagaagtggaactttgcattccagtaatgttccaaat
ggcacactcagcgctggacatggaggatcttctacaagaggacatggagcttcagatgta
ggagctgatttgtcccctgaggcttaccgtcgccggcatgaaataactgtttctggtgat
aatgttcctccaccttttatttcatttgaagcttctggctttccacctgagcttcttaga
gaggtacacaatgctgggttctctgcgccaactccaattcaggcacagtcatggccgatt
gctattcaaagtagagacatagtggccattgccaaaactggttcggggaaaaccttgggt
tacttgattccaggatttattcatctgaagcgcacccgtaatgatgctcaattaggtcct
actgtgctggtattgtcaccaacaagggagttggcaacacagatacaagatgaagctgtg
aagttcggaaggtcatcaagactttcttgcacgtgtttgtacggaggagcaccaaaggga
ccccagttaagggaaatagagagaggagcagatatagtggttgccactcctggccgcttg
aatgatattcttgagatgaagagaattagccttcatcaagtttcttaccttgtgcttgat
gaggctgatcgcatgctagacatgggttttgaacctcagataaggaagattgtaaaggag
gtgcctgctcgccgccagaccctcatgtacacagcaacatggccaaaggaggttcggaaa
attgctgcagatctgctggtcaatcctgttcaggttaacattggcaatgtggatgagctt
gtcgcaaacaagtccatcacgcagcatattgaagtgttgtcatccatggagaaacacaga
cgactggagcagatattacgatctcaagaaccaggatcaaagataattatcttttgttca
accaagaagatgtgtgatcaacttgcccgcaaccttactcgccattttggtgctgctgcc
attcatggagacaaatcgcagggtgagagggatcatgtgttgagtcagttccgaactggg
agatctccagttcttgtagccactgatgttgcagctcgagggctggatatcaaagacatc
aggttggggaccctattttatagtcacattatctacgttttggtactgcattctatggta
cattattttccaaggatcaaaatttggggcaatgatatatcctga
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