Quercus suber (cork oak): 111998656
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Entry
111998656 CDS
T05868
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111998656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
111998656
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111998656
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111998656
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
111998656
NCBI-ProteinID:
XP_023886519
LinkDB
All DBs
Position
Unknown
AA seq
288 aa
AA seq
DB search
MCFAKPEIQPHRPVVIRSVWSHNLESEFGLIRSVIDSYPLIAMDTEFPGVVVRTPNNGSD
SDDGPGFQLRQPDRHYVVLKANVDRLNLIQIGLTLSDSEGNLPDLGTDELYIWEFNFNDF
DVARDAHAHDSVELLRRQGIDFERNREFGVESTRFAELMMSSGLVCNDLVEWVTFHSAYD
FGYLVKVLTQRVLPSELREFLELVRVFFGARVYDVKHLMRYCASLYGGLDRVSQALNVGR
VIGKSHQAGSDSLLTLHAFQKITKDYFGKVNPIEKYAGVLYGLDISDL
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgtgttttgcgaaaccagagattcagcctcatagacccgtggtgataagatcggtatgg
tcgcataatctcgaatcggagttcggtctgatccgatccgttatagattcgtacccgttg
atcgcgatggatacggagtttcccggagtcgtggttcgaacgccgaataacgggtccgat
tcagacgacgggccgggtttccagctccggcagccggaccggcactacgtggtgttgaag
gcgaacgtggaccggttgaatctgatccagatcgggcttacgctgtcggattcggagggg
aatttgccggatctagggaccgacgagctttacatatgggagttcaacttcaacgacttc
gacgtggcgcgtgacgcccacgcgcacgactcggtcgagttgctgaggcgccaggggatc
gacttcgagcggaatcgcgagtttggcgttgagtcgacccggttcgccgagttgatgatg
tcgtcggggctcgtgtgcaacgacctcgtcgagtgggtaacctttcacagcgcgtatgac
ttcggatacctggtcaaggtgctgactcagcgagtcttgccgagcgagttgcgcgagttc
ctcgaactcgtccgagtcttctttggtgctagggtttacgacgtgaaacacttgatgcgg
tactgtgcgagtctctacggtgggctggaccgggtatcccaggcccttaatgtgggtcgg
gtcatcgggaagagtcaccaggccgggtcggatagtttgctgaccctacatgcgtttcag
aagatcaccaaagattacttcggcaaagtcaatccgattgaaaagtatgctggtgttctg
tatggattagatatttccgatctttag
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