KEGG   Quercus suber (cork oak): 111999495
Entry
111999495         CDS       T05868                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
qsu  Quercus suber (cork oak)
Pathway
qsu03030  DNA replication
qsu03410  Base excision repair
qsu03420  Nucleotide excision repair
qsu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:qsu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    111999495
   03410 Base excision repair
    111999495
   03420 Nucleotide excision repair
    111999495
   03430 Mismatch repair
    111999495
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:qsu03032]
    111999495
   03036 Chromosome and associated proteins [BR:qsu03036]
    111999495
   03400 DNA repair and recombination proteins [BR:qsu03400]
    111999495
DNA replication proteins [BR:qsu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    111999495
  DNA Replication Termination Factors
   ELG1-RFC complex
    111999495
Chromosome and associated proteins [BR:qsu03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    111999495
DNA repair and recombination proteins [BR:qsu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     111999495
  Check point factors
   HRAD17(Rad24)-RFC complex
    111999495
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 nSTAND_NTPase5 AAA_22 Mg_chelatase Rad17 AAA_16 AAA_lid_RFC1 Viral_helicase1 RuvB_N RCF1-5-like_lid AAA_11 nSTAND3 AAA_5 AAA_assoc_2 AAA_28 AAA_19 AAA_25 DNAX_ATPase_lid AAA_30 RNA_helicase bpMoxR AAA_24 AAA_3 IstB_IS21 MeaB AAA_18 ABC_tran NTPase_1 AAA_7 SLFN-g3_helicase KTI12 NPHP3_N AAA_29 DO-GTPase1
Other DBs
NCBI-GeneID: 111999495
NCBI-ProteinID: XP_023887389
LinkDB
Position
Unknown
AA seq 336 aa
MAASSSSSGGSSSSGYDMPWVEKYRPNRVADIVGNEDAVSRLQVIARDGNMPNLILSGPP
GTGKTTSILALAHELLGPNFKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVV
ILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEI
LGRLMVVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQP
HPLHVKNMVRNVLEGRFDESCSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMK
ETGFAHMRICDGVGSYLQLCGLLAKLALVRETAKAA
NT seq 1011 nt   +upstreamnt  +downstreamnt
atggctgcttcttcttcttcttctggagggagctcgagcagtggctacgacatgccatgg
gtagagaagtaccgtcccaacagggtcgccgacatcgtgggcaacgaggatgccgtgtcc
aggctccaagtcatcgctcgcgacggcaacatgcccaacctcatcttatccggtcctcct
ggaaccggtaagaccacaagtatactggcactagcacatgagcttctgggaccaaatttt
aaggaggctgttttggagctcaatgcatcagatgacaggggaatagatgttgtaaggaac
aagattaagatgtttgctcaaaagaaagtgacactgccccctgggcggcacaaggtagta
atcttggatgaagctgacagcatgacatctggagcacagcaagctttgagaaggacaatg
gaaatatattcaaactccactcgttttgctcttgcatgcaatacttcttctaaaattatt
gagcctattcaaagtagatgtgctattgttcgattttcaagattatctgatcaagagata
cttggtcgtctcatggtggtggttgaagctgaaaaggttccctatgttccggaaggtctt
gaagccataattttcactgctgatggtgacatgaggcaggcattgaataacttgcaggct
acatacagtgggttccgttttgtcaaccaagaaaatgttttcaaggtttgcgatcagcct
catccgttgcatgtgaagaacatggtgcgcaatgtactagaagggagatttgatgaatct
tgttctggtctcaagcagctctatgatttgggctattcccccactgacataatcacaacc
ctattccgcatcatcaaaaactatgatatggctgagtatctaaaattggaattcatgaag
gaaactggatttgcccatatgagaatctgtgatggagttggttcatatcttcagctctgt
ggtcttttggctaagcttgctctggtgcgagaaacagctaaagctgcataa

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