Quercus suber (cork oak): 111999953
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Entry
111999953 CDS
T05868
Name
(RefSeq) LOW QUALITY PROTEIN: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
qsu
Quercus suber (cork oak)
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsu03041
]
111999953
Enzymes [BR:
qsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111999953
Spliceosome [BR:
qsu03041
]
Complex C
Other components
Complex C specific factors
111999953
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
HA2_N
AAA_19
AAA_30
ResIII
Cas3-like_C_2
AAA_7
nSTAND3
AAA_11
Motif
Other DBs
NCBI-GeneID:
111999953
NCBI-ProteinID:
XP_065637319
LinkDB
All DBs
Position
Unknown
AA seq
695 aa
AA seq
DB search
MSHFWKPGAEKPRIVDDEEGGVLFLSTAASSSSSSGFGYGGMEKQRQRLPVYKYRTAILY
LVETHATSIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQSVAARVAEEMG
VKLGEEVGYTIRFEDLTNTNTTMIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIST
DILLGLLKKIQRRRPELRLIISSATIEAKSMSAFFQASKRRRGLEGEELGPRMEPAILSV
EGRGFNVQIHFAEEPXSDYVQAVVSTVLSIHNQEPMGDILVFLTGQDDIDTAVKLLNEEA
QSNGKKSSGLIVLPLYSGLSRAEQELIFTPTPRGKRKVVISTNIAETSLTLEGIVYVVDS
GFSKQRYYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVNEMSAEGI
PEMQRSNLVSCVIQLKALGIDNILGFDWPASPSPEAMIRALEVLYSLGVLDDDAKLTSPA
GFQVAEIPLEPMISKMILSSNELGCSEEILTIAAILSVQVNCFIPLALVDLIYYHFLWFK
GDHVTFLNVYKGFLQSGKSSQWCHKNHVNYQAMKKVIEIRGQLRRIAQRLGMVLKSCEGD
MKAVRKAVTAGFFANACRLEAFSHSGMYKTVRGSQEVYIHPSSVLFRVNPKWVIFHSLVS
TDRQYMRNVISIDPSWLREAAPHFYQHQPHNAIGH
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcatttctggaagcccggagccgagaagcctcgcatagtcgacgacgaagaaggc
ggagttctgttcttgtccaccgctgcctcttcctcttcctcttcgggattcggctatgga
ggcatggaaaagcagaggcagaggcttcccgtgtataaataccgcaccgcgattctgtat
ttggttgaaactcacgccacttctattatcgttggcgagactggtagtggcaaaaccact
cagattcctcagtaccttaaagaagcaggttgggctgatggtgggcgtgttattgcttgc
actcaacctaggcgtttggctgtccagtcagttgctgcaagggtggctgaagagatgggg
gtcaagcttggagaggaagttggctacacaattcgatttgaagatcttacaaatacaaat
acaaccatgataaagtttctaacggatggggtgttactgagggaaatgatggatgatcct
cttttgaccaagtatagtgtcataatggttgatgaggctcatgaaaggtccatttcaact
gacatattacttggtctactaaaaaagattcaacgccgtcgacctgagctgcgcctgatt
atttcctctgctacaattgaagcaaaatcaatgtctgctttcttccaagccagcaaaagg
cgtcgaggattagaaggtgaggagcttggaccaaggatggaacctgcgatcctatcagtt
gagggtagagggtttaatgtacaaattcattttgctgaggagccgntttcggactatgtt
caggctgttgtttcaacagtattgtcaattcataatcaggaacccatgggtgatattctg
gtatttcttactggtcaagatgatattgatactgctgtcaagttgcttaatgaggaagct
caaagcaatggaaagaaatcttcaggattaattgttttgcctctgtactcgggactctca
cgtgcggagcaggagttgatttttactccaactcctagagggaaaaggaaagtagtgata
tcaacaaatatagcagagacatcgttaactttggagggaattgtgtatgttgttgatagt
gggttctcaaaacagcgatactacaatccgatttcagatattgagaatctggtagtggca
cctatatccaaggcatctgctagacaaagggcaggtagagctggacgagttcgacctggg
aagtgttacaggttatatactgaagagtattttgtcaatgaaatgtctgctgagggtatt
ccagagatgcaaagatcaaaccttgtttcctgtgtgattcagttaaaggccctaggtata
gacaacatcctgggctttgattggcctgcatctccatctcctgaagcaatgattcgagcg
ctagaagtactgtattctcttggagtgttggatgatgatgccaaacttacttcaccggct
ggatttcaagtggcagagattccattagaaccaatgatctccaaaatgatcctttcttca
aatgaacttgggtgttcagaggagattcttactattgctgccattctctctgtccaagta
aattgttttatccctcttgccttagttgatctaatatattatcactttctctggttcaag
ggtgaccatgtgacattcctaaatgtttacaaagggtttcttcaatctggaaaatcttcg
caatggtgtcataagaaccatgtgaattaccaagccatgaaaaaagtgattgaaattaga
gggcagctccgaagaatagcacagagattaggcatggtcttaaaatcttgtgagggagat
atgaaggcagtaagaaaggcagttactgctggctttttcgctaatgcgtgtcgtttagaa
gcattcagtcacagtgggatgtataagactgtcagaggctctcaggaggtttatattcac
ccatcgtctgtgttgttcagagttaacccaaagtgggttatattccattctcttgtctca
actgatcggcagtacatgcgcaatgtcatctccatagatccttcttggctaagggaggct
gccccacatttttaccagcatcaaccacacaatgctattggtcactga
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