Quercus suber (cork oak): 112001034
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Entry
112001034 CDS
T05868
Name
(RefSeq) uncharacterized protein LOC112001034 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112001034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qsu03041
]
112001034
Spliceosome [BR:
qsu03041
]
Complex C
Other components
Step II factors
112001034
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_DCAF4
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_WDR75_2nd
Motif
Other DBs
NCBI-GeneID:
112001034
NCBI-ProteinID:
XP_065635139
LinkDB
All DBs
Position
Unknown
AA seq
621 aa
AA seq
DB search
MDLLQIYKDRNDDEIDELEDQFQNPNSTASSPEASPPRLLPAKFAAPKVDETMLALMAAQ
AYQAQSRPIDPLQHVVTFNPTYEQLWAPIVGPVHPYTKDGIAQGMRNHKLGFVEDASIEP
FIFDEQYYTFHKYGYAPDPSASAGNNCVGDLDALQKNDAISVYNIPQHEQKKRKIEKKET
EKEEGNGYEENLNNVELQNPASDTWLMKNRKSPWAGKKEGLQTELTEEQKKYAEEYAKKK
GEERERGGEKGEIVPDKSTFHGKEERDYQGRSWIAPPKDAKANNDHCYIPKRLVHTWSGH
TKGVSAIRFFPKQGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIWFCNDGTKF
LTAGFDKNIKYWDTETGQVISTFSTGKIPYVVRLNPDDDKQNILLAGMSDKKIVQWDMNT
GQVTQEYDQHLGAVNSITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPDMHSMPSI
SLHPSTNYLAAQSLDNQIFTYSTRDRFQLNKEKRFFGHIVAGYACQVNFSPDGRFIMSGD
GEGKCWFWDWESPKVFTPLECHEGVCIGCEWHPLEQSKGLVASLLYVARCGYIYSCDEPV
FGPRTPTHLFFSPAEALSTSF
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggatctcctccaaatctacaaagaccgaaatgatgatgaaatagacgaattagaggat
caattccaaaacccaaattccactgcatcatcccctgaggcctccccaccgcgccttctt
cccgccaagtttgcagcaccaaaggttgatgaaaccatgttggccctcatggcggctcaa
gcctaccaagcacagtcgaggccaatagacccactccagcatgttgttacctttaacccc
acctatgaacagctctgggcccccattgttggcccagtccacccatacaccaaggacggc
attgcccagggcatgcgcaaccacaagctcggctttgttgaggatgcctccattgaacct
ttcatcttcgatgagcagtactatactttccacaagtatggctatgcccctgacccctct
gcctccgctggcaacaattgtgtcggtgatcttgatgccttgcaaaagaatgatgccatc
tctgtttacaacatcccacagcacgagcaaaagaagaggaagattgaaaagaaggaaaca
gagaaggaggaaggtaatggctacgaagaaaacctcaataacgttgagcttcagaatcca
gccagtgacacttggttgatgaagaataggaagagtccgtgggcaggcaagaaggaaggg
ctacaaactgaattgactgaagagcagaagaagtatgcagaggagtatgctaagaagaag
ggtgaggagagagagagaggcggtgaaaagggagagattgttccagataagagtacattc
catggtaaagaagagagagattatcaaggaaggtcttggattgcgcctcccaaggatgcc
aaggccaacaacgatcattgttatataccgaagagattggtgcacacttggagtggccac
acgaagggcgtgtctgcaataaggttcttcccgaaacaggggcatttgatattgtcagca
gggatggatacaaaggtgaaaatttgggatgtgttcaattcgggcaaatgtatgaggacc
tacatgggtcactccaaggcagttagggatatttggttttgcaatgacgggacaaagttt
ttgactgctgggtttgataagaatatcaagtactgggacacagagactgggcaagtgata
tcaacttttagtaccgggaagattccatatgtggttaggcttaatccggacgatgataag
cagaacattttgttggcggggatgagtgataagaagattgttcagtgggatatgaatact
ggacaggttacgcaagagtatgatcaacatttgggggccgtgaatagcattacgtttgtt
gataataacaggaggtttgtgacttcgagcgatgacaagtcgcttcgagtatgggaattt
gggattcccgtggttataaagtatattagtgagcctgatatgcattctatgccatccatt
tcacttcatcccagtacaaattatcttgccgcacagagtttggacaatcagatttttacg
tatagcacgagggacaggtttcagctcaataaggagaagagatttttcgggcacattgtg
gcagggtatgcttgccaggtcaatttctcgccagatggccggtttattatgtcaggagat
ggtgagggtaaatgctggttttgggattgggagtcgcccaaagttttcacacctctcgag
tgtcatgagggagtgtgcattgggtgtgagtggcacccattggaacaaagcaagggacta
gttgcttctctgctctatgttgcaaggtgcggatatatatattcatgtgatgaacctgtc
tttggcccacggactcccacacatttattcttcagccccgcagaagccctatcaacctcc
ttttag
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