Quercus suber (cork oak): 112001100
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Entry
112001100 CDS
T05868
Name
(RefSeq) uncharacterized protein LOC112001100 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112001100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsu03021
]
112001100
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112001100
Transcription machinery [BR:
qsu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112001100
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112001100
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
112001100
NCBI-ProteinID:
XP_023889034
LinkDB
All DBs
Position
Unknown
AA seq
628 aa
AA seq
DB search
MRPLYNSFPQQPNSSTAPPSQQVMPPTHSNANSSNLVQKNNTKFRPQFGTNNNPQIQAPF
NNSNMRPSINRPGFMNPPLQNSHLGMPHLGSQPGQSHVGYSPQNKVSNMNPVQGFPLNGQ
FCNMAQNPNQVNVSQPAFVHNMQNSNQQLNQNMGFPNGQFCMPNMLQNMNQFMPTLQMPN
SSQVVSYGIPICPPYMGVPNQAPRATVPQNPTFFANPQFGLGHCNQVRQQVNQNQQNLVP
PAANANALKPSPFAAQQLRGGNLPALPNHCSGNLVNNGGIDNPSSNRQDSPNKNYTMNPK
GGQLRGGFQKSQFHRMKNAKRGFPNEHKGKGFSKEKAGKFGHVNSNNQARGQKRSLSLTY
TEQEIQQWCEARRKNYPSKATVEKKQSQKLADDEGIAREAKLRREQLKEILAKQAELGVE
VAEVPSHYLSDLEKQGQRREENRMPFSKKGRFRNRFDKRGRYEKKDRFAKKQRLADKDSS
DAPSLNKKKPTLLQKLLSADVRRDKSHLLQIFRFMVMNSFFTDWPDKPLKFPSVIVKEIG
CESEVVEEKCSPVGKDAEGGNEAVVNKSHDEDDDDDEDDNGVDEDKNEGDDNNELSYFAR
IEGIIGERTEIPEEEEGEIVDYNDTLPL
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgcgacctctctacaactcctttcctcagcaacctaattcctccactgctccaccttct
caacaggttatgccacctactcattcaaatgcaaattcatctaatttagtgcaaaaaaac
aacacgaaatttcgaccccagtttggcacgaacaacaatcctcaaattcaagcccctttc
aataattccaatatgaggccttccataaatcgacctggtttcatgaacccacctttgcaa
aattctcatctgggtatgccccatttgggttctcaaccgggtcagtcccatgtggggtac
agtccacaaaacaaggtaagcaatatgaacccggttcaagggtttccgcttaatgggcaa
ttctgcaatatggcgcagaatccgaaccaagtcaatgtttctcagcctgcttttgtgcat
aatatgcagaactcaaaccaacagctcaatcaaaatatgggttttccaaatgggcagttt
tgtatgcccaatatgttgcaaaatatgaaccaatttatgcccaccttgcaaatgccaaat
tcttctcaagttgtttcttatggtatccctatttgtcctccatacatgggtgttccgaat
caagcacctcgggccacagttcctcaaaatcccacctttttcgcaaatccgcagtttggt
cttggtcattgtaatcaggtcaggcagcaagttaatcagaatcagcaaaacttggttcca
cctgcagcaaatgcaaatgcattaaaaccatcgccttttgcagctcagcaattgcgagga
gggaacttacctgcactgcctaatcattgttcggggaatcttgttaataatggtgggatt
gataacccaagctccaacaggcaagattcaccaaacaaaaactacactatgaatccaaaa
ggagggcaattgcgagggggatttcagaagtctcagtttcatcgtatgaaaaatgcaaag
agagggtttcctaatgaacacaaggggaaagggtttagcaaggagaaggcaggaaagttt
ggtcacgttaattccaacaaccaggccaggggtcagaagagatctctttctttgacctac
acggaacaagaaatccaacagtggtgtgaagcacgtcggaagaactacccatcaaaagcc
actgtagagaagaagcagagtcagaagctagcagatgatgagggtattgctagagaggcc
aaactgcgaagagagcaactcaaggagatcctagcaaagcaagctgaattgggagttgaa
gttgcagaggtaccatcacactatctatcagatttggagaaacaagggcagagaagggaa
gaaaacagaatgcccttttcaaagaaagggagattccgaaacaggtttgataaaagagga
agatatgaaaaaaaagaccggtttgctaagaagcagaggcttgcagacaaggattcatct
gatgccccttctttgaacaagaaaaagccaacattactgcagaagcttctcagtgcagat
gtaaggagagataaaagccacctattgcagatttttaggttcatggtgatgaactctttc
ttcaccgattggcctgataaacctctaaaatttccttcagtgatagttaaagaaattggg
tgtgagagtgaggtggttgaagagaaatgttcacctgtgggaaaagatgctgaaggtggc
aacgaggctgtggttaacaaatcccatgatgaagatgatgatgatgatgaagatgataat
ggtgtagatgaagacaagaatgaaggtgatgacaataatgaattgtcttattttgctagg
atagaaggtataattggggagagaaccgagatacccgaggaggaagagggtgaaattgtt
gactataatgatactcttcctctctga
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