Quercus suber (cork oak): 112001699
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Entry
112001699 CDS
T05868
Name
(RefSeq) serine/arginine-rich splicing factor SR45 isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03013
Nucleocytoplasmic transport
qsu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112001699
03015 mRNA surveillance pathway
112001699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qsu03019
]
112001699
Messenger RNA biogenesis [BR:
qsu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112001699
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Nup35_RRM_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
112001699
NCBI-ProteinID:
XP_023889647
LinkDB
All DBs
Position
Unknown
AA seq
423 aa
AA seq
DB search
MAKPSRGGRRSPPSGSASGSSSRSRSYSGSDSRSRSSSRSRSVSRSRSLSRSRSRSRSFS
SSSSPSRSASSRSPSAPPPKKSPAEVARRGRTPPSQSKRTSPPPRKASPIRESLVLHIEK
LSRNVNEGHLKEIFSNFGEVVNVELAMDRAVNIPRGYGYVEFKTRVDAEKAQLFMDGAQI
DGNVVQARFTLPPRQKLSPPLKAIASAPKRDVPKTDNVNADGEKDGPKRQRELSPRRKPA
TSPRRRSPITRRGGSPRRPPDSPPRRRPDSPVRRRLDSPYRRGDTPPRRRPTSPGRGRSS
TSPRRNRSPARRMRGSPVRRRSPLPPRRRSPPRRARSPLRRSPIGRRRTPPIRRTARSRS
RSASPRRGRAPIGRRGRSSSYSGSPSPRKLPRRSRSRSPRRPIKGRSSSNSSRSSSPLLP
RKP
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccaagccgaggaggccgccggtcgccgccgtcagggtccgcgtcgggctcg
tcctctcgctcccggtcttactccggctccgactctcgctctcgctccagctctcgctcg
cgctccgtctctcgctcgcgctctctctctcgctctagatctcgctccaggtccttctcc
tcctcttcctctccctcccgaagcgccagttctcgcagccctagcgcacctcctcccaag
aaaagtcctgctgaagtagctaggagaggtcgcactccaccttcacaatctaaaagaact
tctccacccccaaggaaagcttctcctattcgagagtcgcttgttcttcacattgagaaa
ctaagcaggaatgtgaatgaaggccatttaaaagaaatattcagtaactttggtgaagtt
gtaaatgtggagctagcaatggatcgcgctgtcaatatcccaagaggatatggatatgtg
gagttcaagacaagagtggatgctgaaaaagcacaactattcatggatggtgcacaaatt
gatgggaatgtggttcaagcgaggttcacattacccccaagacagaagctgtcgcctccc
ctaaaagccattgccagtgcaccaaaaagagatgtgcccaaaactgataatgttaatgct
gatggtgagaaggatggaccaaagcgacaaagagaactttctccccgtcggaagcccgct
acctcacctcgaaggagatcccctattactcgaaggggtggatctcctagacgaccacca
gattctcctccacgtcgtcgtccagattctcctgttcgtcgtagattggattctccttat
cgccgtggtgatacacctccaaggaggaggccaacatctcctggccgcggtcgttcctca
acttcaccaagacgcaatagatcccctgcaagaaggatgcgtggcagtcctgttcgcaga
cgttctccacttcctccaaggcgccgttcacccccaagacgagctcgtagtcctcttaga
aggtctcctattggtcgtaggcgtactcctcctattcgtagaactgcccgctcacgttca
cgatcagcttctccacggagaggtcgtgcaccaatcggaagacgtgggcgctcctcatcc
tactctggatcacctagtccacgcaagttacctcggagatcaaggagtcgtagcccgaga
aggcccattaaaggaagaagcagtagcaacagcagccgcagtagttcgccactgctgcct
cgtaaaccatag
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